Wall clock time and date at job start Mon Mar 30 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47631 * 2 1 4 4 C 1.50704 * 109.47507 * 239.99761 * 2 1 3 5 5 H 1.08003 * 120.00143 * 240.00120 * 4 2 1 6 6 C 1.37881 * 119.99784 * 60.00131 * 4 2 1 7 7 N 1.31516 * 119.99916 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99949 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47245 * 89.99357 * 8 6 4 10 10 H 1.48495 * 109.46867 * 210.00073 * 8 6 4 11 11 H 1.48501 * 109.46800 * 329.99605 * 8 6 4 12 12 N 1.46505 * 109.47147 * 119.99942 * 2 1 3 13 13 C 1.46499 * 120.00132 * 64.72844 * 12 2 1 14 14 C 1.39709 * 119.99903 * 244.73149 * 12 2 1 15 15 C 1.39313 * 120.49368 * 174.24200 * 14 12 2 16 16 C 1.38492 * 118.36061 * 180.02562 * 15 14 12 17 17 C 1.38280 * 119.24055 * 0.02562 * 16 15 14 18 18 N 1.31856 * 120.92787 * 359.97438 * 17 16 15 19 19 C 1.31823 * 121.80067 * 0.02562 * 18 17 16 20 20 H 1.09005 * 109.46607 * 60.00348 * 1 2 3 21 21 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 22 22 H 1.08989 * 109.47355 * 300.00487 * 1 2 3 23 23 H 0.96995 * 119.99988 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.47104 * 270.00476 * 13 12 2 25 25 H 1.09000 * 109.46629 * 29.99963 * 13 12 2 26 26 H 1.08994 * 109.47103 * 150.00360 * 13 12 2 27 27 H 1.07999 * 120.81849 * 0.02562 * 15 14 12 28 28 H 1.07996 * 120.37811 * 179.97438 * 16 15 14 29 29 H 1.07994 * 119.53453 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.66893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4868 -0.1414 -5.1121 11 1 3.6295 -1.7583 -3.7120 12 7 2.0183 -0.6906 1.1962 13 6 1.7518 -2.1198 1.3770 14 6 2.7381 0.0138 2.1645 15 6 3.1041 -0.6012 3.3598 16 6 3.8165 0.1384 4.2890 17 6 4.1384 1.4524 4.0029 18 7 3.7772 2.0057 2.8619 19 6 3.0985 1.3379 1.9502 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8898 23 1 0.7088 1.1612 -3.4844 24 1 0.8095 -2.2492 1.9095 25 1 1.6878 -2.6035 0.4024 26 1 2.5598 -2.5699 1.9538 27 1 2.8387 -1.6294 3.5569 28 1 4.1166 -0.3058 5.2265 29 1 4.6942 2.0334 4.7239 30 1 2.8206 1.8250 1.0273 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:27 Heat of formation + Delta-G solvation = 42.480809 kcal Electronic energy + Delta-G solvation = -13288.474890 eV Core-core repulsion = 11083.938506 eV Total energy + Delta-G solvation = -2204.536384 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.57859 -36.53345 -33.21436 -31.54653 -30.06462 -28.88634 -25.62509 -25.29791 -22.91022 -21.77349 -19.75173 -17.17483 -16.45709 -15.57708 -15.46782 -14.55006 -13.98282 -13.73939 -13.36142 -12.82823 -12.66743 -12.44770 -11.70239 -11.58008 -11.32669 -11.01788 -10.91698 -10.66685 -10.29051 -10.16396 -9.73280 -9.19873 -8.88989 -8.81368 -8.51850 -6.57747 -6.14572 -4.25840 1.82427 2.08947 3.21210 3.28912 3.31691 3.99048 4.33360 4.52381 5.11938 5.21379 5.34798 5.48306 5.68924 5.79373 5.97871 6.08020 6.22111 6.37678 6.62378 6.68052 6.71919 6.82899 6.97452 7.14608 7.35713 7.58663 7.76943 7.99455 8.19894 8.40369 8.71837 8.80046 9.41434 10.87510 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.044326 B = 0.009047 C = 0.008706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.531577 B = 3094.303280 C = 3215.546966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.598 5.598 13 C 0.097 3.903 14 C 0.190 3.810 15 C -0.185 4.185 16 C -0.123 4.123 17 C 0.000 4.000 18 N -0.448 5.448 19 C 0.021 3.979 20 H 0.094 0.906 21 H 0.030 0.970 22 H 0.012 0.988 23 H 0.265 0.735 24 H 0.036 0.964 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.140 0.860 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -3.382 8.218 9.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.302 5.302 13 C -0.047 4.047 14 C 0.079 3.921 15 C -0.216 4.216 16 C -0.144 4.144 17 C -0.158 4.158 18 N -0.156 5.156 19 C -0.144 4.144 20 H 0.112 0.888 21 H 0.049 0.951 22 H 0.031 0.969 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.157 0.843 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.865 -2.519 7.730 8.341 hybrid contribution 0.033 -1.471 -0.674 1.619 sum 1.898 -3.990 7.056 8.325 Atomic orbital electron populations 1.22124 0.98220 0.99641 1.00764 1.18986 0.90996 0.93405 0.80348 0.92976 1.21341 1.31939 1.13329 0.90170 0.92066 1.24900 0.94804 0.94964 0.99038 1.69860 1.36138 1.22542 1.23999 0.86477 0.79233 0.79357 0.82278 1.20581 1.21007 1.19886 1.47277 1.54630 1.07915 1.20418 1.21489 0.98667 0.82322 1.02248 1.19074 0.90842 0.92988 0.89173 1.20999 1.05725 1.00735 0.94144 1.21726 0.98110 0.95484 0.99057 1.22177 1.04404 0.93515 0.95752 1.67450 1.08635 1.37896 1.01601 1.22595 1.00855 0.91245 0.99674 0.88800 0.95097 0.96928 0.92528 0.94563 0.90238 0.93177 0.85785 0.86096 0.84253 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.04 37.16 0.34 -3.12 16 2 C 0.26 6.30 2.59 -69.08 -0.18 6.13 16 3 H 0.05 1.35 5.34 -51.93 -0.28 1.07 16 4 C -0.53 -13.72 7.96 -34.44 -0.27 -13.99 16 5 H 0.06 1.59 7.00 -52.48 -0.37 1.22 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.04 11.32 55.43 0.63 -23.41 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.60 -12.51 2.89 -173.19 -0.50 -13.01 16 13 C 0.10 1.71 9.26 59.85 0.55 2.26 16 14 C 0.19 3.80 6.55 -83.63 -0.55 3.25 16 15 C -0.19 -3.14 9.26 -39.09 -0.36 -3.50 16 16 C -0.12 -1.88 10.10 -39.47 -0.40 -2.28 16 17 C 0.00 0.00 11.18 -17.53 -0.20 -0.20 16 18 N -0.45 -8.84 10.35 -13.08 -0.14 -8.98 16 19 C 0.02 0.43 10.49 -17.31 -0.18 0.25 16 20 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 21 H 0.03 0.68 7.79 -51.93 -0.40 0.28 16 22 H 0.01 0.26 8.14 -51.94 -0.42 -0.16 16 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.48 6.67 -51.93 -0.35 1.14 16 26 H 0.05 0.77 6.50 -51.93 -0.34 0.43 16 27 H 0.12 1.84 6.44 -52.49 -0.34 1.50 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.16 3.47 5.76 -52.49 -0.30 3.17 16 LS Contribution 249.42 15.07 3.76 3.76 Total: -1.00 -27.61 249.42 -6.13 -33.73 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.51 Total: 1.99 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.34 Total: -9.57 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.01 Total: -45.40 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.61 -6.13 -33.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.216 kcal (2) G-P(sol) polarization free energy of solvation -27.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds