Wall clock time and date at job start Mon Mar 30 2020 02:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47631 * 2 1 4 4 C 1.50704 * 109.47507 * 239.99761 * 2 1 3 5 5 H 1.08003 * 120.00143 * 240.00120 * 4 2 1 6 6 C 1.37881 * 119.99784 * 60.00131 * 4 2 1 7 7 N 1.31516 * 119.99916 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99949 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47245 * 89.99357 * 8 6 4 10 10 H 1.48495 * 109.46867 * 210.00073 * 8 6 4 11 11 H 1.48501 * 109.46800 * 329.99605 * 8 6 4 12 12 N 1.46505 * 109.47147 * 119.99942 * 2 1 3 13 13 C 1.46499 * 120.00132 * 64.72844 * 12 2 1 14 14 C 1.39709 * 119.99903 * 244.73149 * 12 2 1 15 15 C 1.39313 * 120.49368 * 174.24200 * 14 12 2 16 16 C 1.38492 * 118.36061 * 180.02562 * 15 14 12 17 17 C 1.38280 * 119.24055 * 0.02562 * 16 15 14 18 18 N 1.31856 * 120.92787 * 359.97438 * 17 16 15 19 19 C 1.31823 * 121.80067 * 0.02562 * 18 17 16 20 20 H 1.09005 * 109.46607 * 60.00348 * 1 2 3 21 21 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 22 22 H 1.08989 * 109.47355 * 300.00487 * 1 2 3 23 23 H 0.96995 * 119.99988 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.47104 * 270.00476 * 13 12 2 25 25 H 1.09000 * 109.46629 * 29.99963 * 13 12 2 26 26 H 1.08994 * 109.47103 * 150.00360 * 13 12 2 27 27 H 1.07999 * 120.81849 * 0.02562 * 15 14 12 28 28 H 1.07996 * 120.37811 * 179.97438 * 16 15 14 29 29 H 1.07994 * 119.53453 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.66893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4868 -0.1414 -5.1121 11 1 3.6295 -1.7583 -3.7120 12 7 2.0183 -0.6906 1.1962 13 6 1.7518 -2.1198 1.3770 14 6 2.7381 0.0138 2.1645 15 6 3.1041 -0.6012 3.3598 16 6 3.8165 0.1384 4.2890 17 6 4.1384 1.4524 4.0029 18 7 3.7772 2.0057 2.8619 19 6 3.0985 1.3379 1.9502 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8898 23 1 0.7088 1.1612 -3.4844 24 1 0.8095 -2.2492 1.9095 25 1 1.6878 -2.6035 0.4024 26 1 2.5598 -2.5699 1.9538 27 1 2.8387 -1.6294 3.5569 28 1 4.1166 -0.3058 5.2265 29 1 4.6942 2.0334 4.7239 30 1 2.8206 1.8250 1.0273 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261127398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:26 Heat of formation + Delta-G solvation = 26.157506 kcal Electronic energy + Delta-G solvation = -13289.182721 eV Core-core repulsion = 11083.938506 eV Total energy + Delta-G solvation = -2205.244215 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00753 -38.13794 -35.05694 -33.02598 -31.67936 -30.45803 -27.30712 -27.08536 -24.39281 -23.28512 -21.41261 -18.75629 -18.22667 -17.24424 -16.90056 -16.29461 -15.49893 -15.19449 -14.96129 -14.33889 -14.10884 -14.03568 -13.50817 -13.16072 -12.89650 -12.75992 -12.69733 -12.42260 -12.16934 -11.90848 -11.36718 -10.91120 -10.55352 -10.29250 -10.22386 -8.27833 -7.97707 -6.31587 0.45038 0.70416 1.40164 1.42064 1.51277 2.33695 2.55703 3.09927 3.13471 3.81197 4.08540 4.15610 4.36400 4.42829 4.67453 4.70845 4.75199 4.86465 4.96828 5.03521 5.08946 5.28426 5.37074 5.42627 5.60623 5.84184 5.90704 6.14232 6.42656 6.81579 6.84430 7.31132 7.39403 8.87315 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.044326 B = 0.009047 C = 0.008706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.531577 B = 3094.303280 C = 3215.546966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.267 3.733 3 H 0.024 0.976 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.612 5.612 13 C 0.097 3.903 14 C 0.168 3.832 15 C -0.176 4.176 16 C -0.108 4.108 17 C 0.001 3.999 18 N -0.473 5.473 19 C -0.013 4.013 20 H 0.069 0.931 21 H 0.036 0.964 22 H 0.020 0.980 23 H 0.265 0.735 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.171 0.829 29 H 0.175 0.825 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 -4.948 10.190 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.165 3.835 3 H 0.042 0.958 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.318 5.318 13 C -0.046 4.046 14 C 0.059 3.941 15 C -0.206 4.206 16 C -0.128 4.128 17 C -0.158 4.158 18 N -0.182 5.182 19 C -0.175 4.175 20 H 0.088 0.912 21 H 0.055 0.945 22 H 0.039 0.961 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.170 0.830 28 H 0.188 0.812 29 H 0.192 0.808 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.797 -4.093 9.710 10.902 hybrid contribution -0.172 -0.942 -1.104 1.462 sum 2.625 -5.035 8.605 10.309 Atomic orbital electron populations 1.21926 0.97951 0.99625 0.99873 1.18641 0.91134 0.92242 0.81446 0.95846 1.21597 1.31717 1.13167 0.91264 0.92487 1.25648 0.95069 0.95636 1.01742 1.69985 1.37135 1.23709 1.24480 0.85531 0.78727 0.78335 0.78892 1.19708 1.20976 1.19758 1.47093 1.55754 1.09006 1.19958 1.21593 1.00447 0.80489 1.02037 1.19245 0.91682 0.92827 0.90368 1.21403 1.04484 1.01987 0.92751 1.22236 0.95858 0.94564 1.00164 1.22915 1.03257 0.94753 0.94914 1.67403 1.09233 1.38802 1.02758 1.22246 1.03313 0.92302 0.99676 0.91241 0.94483 0.96137 0.92569 0.93088 0.91803 0.90518 0.83033 0.81173 0.80781 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 9.04 71.98 0.65 -5.78 16 2 C 0.27 13.25 2.59 44.24 0.11 13.37 16 3 H 0.02 1.31 5.34 -2.39 -0.01 1.29 16 4 C -0.54 -28.55 7.96 25.60 0.20 -28.35 16 5 H 0.06 3.00 7.00 -2.91 -0.02 2.98 16 6 C 0.02 1.02 5.30 84.66 0.45 1.46 16 7 N -0.91 -51.02 11.32 21.45 0.24 -50.78 16 8 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.61 -25.58 2.89 -701.84 -2.03 -27.61 16 13 C 0.10 3.28 9.26 127.77 1.18 4.47 16 14 C 0.17 6.61 6.55 38.30 0.25 6.86 16 15 C -0.18 -5.36 9.26 22.59 0.21 -5.15 16 16 C -0.11 -2.79 10.10 22.34 0.23 -2.57 16 17 C 0.00 0.04 11.18 84.70 0.95 0.98 16 18 N -0.47 -18.52 10.35 -195.29 -2.02 -20.54 16 19 C -0.01 -0.56 10.49 84.85 0.89 0.33 16 20 H 0.07 3.64 6.07 -2.38 -0.01 3.63 16 21 H 0.04 1.65 7.79 -2.39 -0.02 1.63 16 22 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.27 14.09 8.31 -92.71 -0.77 13.31 16 24 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.06 2.33 6.67 -2.39 -0.02 2.32 16 26 H 0.08 2.13 6.50 -2.39 -0.02 2.12 16 27 H 0.15 3.75 6.44 -2.91 -0.02 3.73 16 28 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.13 6.12 5.76 -2.91 -0.02 6.11 16 Total: -1.00 -60.97 249.42 4.47 -56.49 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.13 Total: 12.30 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.12 Total: -14.37 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -3.81 Total: -98.93 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -60.97 4.47 -56.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.652 kcal (2) G-P(sol) polarization free energy of solvation -60.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds