Wall clock time and date at job start Mon Mar 30 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47165 * 2 1 4 4 C 1.38223 * 119.62264 * 125.02051 * 3 2 1 5 5 C 1.38628 * 119.16031 * 179.97438 * 4 3 2 6 6 C 1.38672 * 118.42475 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.41883 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47699 * 340.02603 * 7 6 5 9 9 N 1.46901 * 109.47334 * 220.02152 * 7 6 5 10 10 C 1.50711 * 109.47041 * 100.02893 * 7 6 5 11 11 H 1.08000 * 119.99713 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00064 * 180.02562 * 10 7 6 13 13 N 1.31510 * 119.99896 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99980 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46656 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47182 * 119.99733 * 14 12 10 17 17 H 1.48506 * 109.46936 * 240.00044 * 14 12 10 18 18 C 1.38186 * 119.15778 * 0.02562 * 6 5 4 19 19 N 1.31856 * 119.61279 * 304.99522 * 3 2 1 20 20 H 1.09001 * 109.47174 * 300.00692 * 1 2 3 21 21 H 1.08999 * 109.46811 * 60.00357 * 1 2 3 22 22 H 1.09001 * 109.46919 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47414 * 239.99771 * 2 1 3 24 24 H 1.09005 * 109.47187 * 119.99044 * 2 1 3 25 25 H 1.07996 * 120.41822 * 359.97438 * 4 3 2 26 26 H 1.08006 * 120.78822 * 180.02562 * 5 4 3 27 27 H 1.00901 * 111.00210 * 300.01021 * 9 7 6 28 28 H 1.00907 * 110.99638 * 63.96050 * 9 7 6 29 29 H 0.97004 * 120.00104 * 180.02562 * 13 12 10 30 30 H 1.08001 * 119.60956 * 180.27218 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9102 1.8351 0.9840 5 6 3.3666 3.1441 0.9746 6 6 2.9215 3.9911 -0.0291 7 6 3.3885 5.4229 -0.0820 8 1 3.7651 5.7187 0.8971 9 7 2.2644 6.2911 -0.4571 10 6 4.4880 5.5552 -1.1042 11 1 4.8161 4.6890 -1.6596 12 6 5.0758 6.7819 -1.3296 13 7 4.6766 7.8365 -0.6529 14 14 6.4391 6.9457 -2.5961 15 1 6.7015 5.6216 -3.2149 16 1 6.0256 7.9104 -3.6465 17 1 7.6745 7.4352 -1.9329 18 6 2.0435 3.5059 -0.9795 19 7 1.6297 2.2543 -0.9391 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.2363 1.1478 1.7505 26 1 4.0533 3.4956 1.7305 27 1 1.8972 6.0367 -1.3619 28 1 1.5407 6.2695 0.2458 29 1 5.0899 8.6996 -0.8117 30 1 1.6956 4.1580 -1.7670 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:27 Heat of formation + Delta-G solvation = 21.781718 kcal Electronic energy + Delta-G solvation = -12965.466522 eV Core-core repulsion = 10760.032558 eV Total energy + Delta-G solvation = -2205.433964 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75612 -35.38624 -33.19667 -31.80963 -31.38610 -28.70753 -26.06384 -24.05648 -23.29369 -21.32812 -20.17161 -16.60223 -16.17444 -15.57288 -14.90821 -14.24111 -14.14326 -14.05801 -13.45222 -13.11253 -12.66193 -12.37293 -11.97653 -11.67879 -11.38009 -11.04641 -10.97955 -10.85934 -10.61225 -10.01308 -9.45477 -9.07412 -8.84880 -8.47205 -8.05480 -7.13662 -5.92673 -4.08332 1.72706 1.91550 3.30514 3.39014 3.43044 4.33416 4.49343 4.71771 5.02180 5.31141 5.34661 5.43758 5.58160 5.68024 5.73954 5.83877 5.93582 6.13110 6.18428 6.24935 6.34627 6.45783 6.73647 6.88263 7.34697 7.41780 7.85600 8.11121 8.54134 8.57941 8.93738 9.08558 9.61009 11.11572 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.053803 B = 0.007771 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.296557 B = 3602.059784 C = 3724.368111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C 0.093 3.907 4 C -0.173 4.173 5 C -0.081 4.081 6 C -0.124 4.124 7 C 0.258 3.742 8 H 0.048 0.952 9 N -0.809 5.809 10 C -0.533 4.533 11 H 0.053 0.947 12 C 0.085 3.915 13 N -0.846 5.846 14 Si 0.885 3.115 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.094 3.906 19 N -0.484 5.484 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.318 0.682 28 H 0.299 0.701 29 H 0.256 0.744 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -10.870 2.744 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.045 4.045 4 C -0.193 4.193 5 C -0.108 4.108 6 C -0.128 4.128 7 C 0.147 3.853 8 H 0.066 0.934 9 N -0.334 5.334 10 C -0.571 4.571 11 H 0.072 0.928 12 C -0.122 4.122 13 N -0.480 5.480 14 Si 0.713 3.287 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.064 4.064 19 N -0.193 5.193 20 H 0.068 0.932 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.131 0.869 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.046 -10.340 2.172 11.709 hybrid contribution 0.930 -0.388 -0.047 1.009 sum -4.117 -10.728 2.125 11.686 Atomic orbital electron populations 1.21652 0.94741 1.00948 1.02543 1.20344 0.96514 0.91270 1.02217 1.20997 0.95588 0.95850 0.92060 1.21855 1.00113 0.96964 1.00335 1.21525 0.98018 0.92937 0.98284 1.22757 0.94588 1.02227 0.93228 1.18171 0.89712 0.79117 0.98278 0.93418 1.59195 1.10762 1.59235 1.04239 1.20844 1.18412 0.94622 1.23256 0.92843 1.24942 0.95959 0.95847 0.95498 1.70110 1.39566 0.99192 1.39135 0.86673 0.82139 0.78117 0.81801 1.19898 1.20909 1.21027 1.22482 0.95132 0.91207 0.97540 1.67336 1.24386 1.04055 1.23556 0.93166 0.91673 0.92949 0.90788 0.91106 0.86002 0.85382 0.86911 0.89090 0.93392 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.77 37.16 0.36 -1.31 16 2 C -0.07 -0.84 6.33 -27.88 -0.18 -1.02 16 3 C 0.09 1.56 6.18 -82.59 -0.51 1.05 16 4 C -0.17 -2.84 9.71 -39.44 -0.38 -3.22 16 5 C -0.08 -1.52 9.82 -39.28 -0.39 -1.91 16 6 C -0.12 -2.59 4.89 -104.48 -0.51 -3.10 16 7 C 0.26 6.23 2.87 -70.01 -0.20 6.03 16 8 H 0.05 1.26 8.03 -51.93 -0.42 0.84 16 9 N -0.81 -18.54 8.37 -6.65 -0.06 -18.59 16 10 C -0.53 -14.43 8.71 -34.44 -0.30 -14.73 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.08 2.33 5.39 -17.82 -0.10 2.24 16 13 N -0.85 -24.26 12.77 55.43 0.71 -23.55 16 14 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.09 1.88 10.46 -17.55 -0.18 1.69 16 19 N -0.48 -9.17 9.88 -9.47 -0.09 -9.27 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.86 7.95 -51.93 -0.41 0.45 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 25 H 0.12 1.61 7.95 -52.49 -0.42 1.19 16 26 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 27 H 0.32 6.93 7.37 -39.29 -0.29 6.64 16 28 H 0.30 6.14 9.06 -39.29 -0.36 5.79 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.15 2.87 6.69 -52.49 -0.35 2.51 16 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -29.57 259.46 -6.82 -36.39 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -3.88 Total: 9.22 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.38 Total: -14.28 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.56 Total: -51.42 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.57 -6.82 -36.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.173 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds