Wall clock time and date at job start Mon Mar 30 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47165 * 2 1 4 4 C 1.38223 * 119.62264 * 125.02051 * 3 2 1 5 5 C 1.38628 * 119.16031 * 179.97438 * 4 3 2 6 6 C 1.38672 * 118.42475 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.41883 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47699 * 340.02603 * 7 6 5 9 9 N 1.46901 * 109.47334 * 220.02152 * 7 6 5 10 10 C 1.50711 * 109.47041 * 100.02893 * 7 6 5 11 11 H 1.08000 * 119.99713 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00064 * 180.02562 * 10 7 6 13 13 N 1.31510 * 119.99896 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99980 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46656 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47182 * 119.99733 * 14 12 10 17 17 H 1.48506 * 109.46936 * 240.00044 * 14 12 10 18 18 C 1.38186 * 119.15778 * 0.02562 * 6 5 4 19 19 N 1.31856 * 119.61279 * 304.99522 * 3 2 1 20 20 H 1.09001 * 109.47174 * 300.00692 * 1 2 3 21 21 H 1.08999 * 109.46811 * 60.00357 * 1 2 3 22 22 H 1.09001 * 109.46919 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47414 * 239.99771 * 2 1 3 24 24 H 1.09005 * 109.47187 * 119.99044 * 2 1 3 25 25 H 1.07996 * 120.41822 * 359.97438 * 4 3 2 26 26 H 1.08006 * 120.78822 * 180.02562 * 5 4 3 27 27 H 1.00901 * 111.00210 * 300.01021 * 9 7 6 28 28 H 1.00907 * 110.99638 * 63.96050 * 9 7 6 29 29 H 0.97004 * 120.00104 * 180.02562 * 13 12 10 30 30 H 1.08001 * 119.60956 * 180.27218 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9102 1.8351 0.9840 5 6 3.3666 3.1441 0.9746 6 6 2.9215 3.9911 -0.0291 7 6 3.3885 5.4229 -0.0820 8 1 3.7651 5.7187 0.8971 9 7 2.2644 6.2911 -0.4571 10 6 4.4880 5.5552 -1.1042 11 1 4.8161 4.6890 -1.6596 12 6 5.0758 6.7819 -1.3296 13 7 4.6766 7.8365 -0.6529 14 14 6.4391 6.9457 -2.5961 15 1 6.7015 5.6216 -3.2149 16 1 6.0256 7.9104 -3.6465 17 1 7.6745 7.4352 -1.9329 18 6 2.0435 3.5059 -0.9795 19 7 1.6297 2.2543 -0.9391 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.2363 1.1478 1.7505 26 1 4.0533 3.4956 1.7305 27 1 1.8972 6.0367 -1.3619 28 1 1.5407 6.2695 0.2458 29 1 5.0899 8.6996 -0.8117 30 1 1.6956 4.1580 -1.7670 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261136185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:26 Heat of formation + Delta-G solvation = 1.920896 kcal Electronic energy + Delta-G solvation = -12966.327752 eV Core-core repulsion = 10760.032558 eV Total energy + Delta-G solvation = -2206.295194 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19434 -37.05609 -34.64322 -33.45093 -33.05040 -30.14233 -28.02076 -25.42336 -24.84332 -22.75021 -21.72108 -18.58572 -17.64786 -17.07908 -16.64616 -15.90860 -15.75209 -15.42417 -14.66584 -14.50804 -14.36985 -13.92541 -13.44099 -13.30233 -12.83106 -12.74175 -12.58861 -12.13489 -11.95714 -11.90746 -11.35533 -10.62733 -10.55007 -10.29713 -9.60159 -8.92552 -8.01802 -6.23790 0.29711 0.45168 1.40403 1.43274 1.53320 2.44137 2.94149 3.22122 3.44467 3.83742 4.12271 4.22497 4.31442 4.38832 4.45093 4.55431 4.58427 4.78112 5.00496 5.06517 5.14391 5.25835 5.33405 5.44821 5.63462 5.71769 5.91231 6.11989 6.60087 7.04961 7.12718 7.21135 7.49111 9.01738 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.053803 B = 0.007771 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.296557 B = 3602.059784 C = 3724.368111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C 0.092 3.908 4 C -0.164 4.164 5 C -0.090 4.090 6 C -0.147 4.147 7 C 0.265 3.735 8 H 0.017 0.983 9 N -0.818 5.818 10 C -0.544 4.544 11 H 0.041 0.959 12 C 0.038 3.962 13 N -0.877 5.877 14 Si 0.948 3.052 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.278 1.278 18 C 0.085 3.915 19 N -0.497 5.497 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.163 0.837 26 H 0.135 0.865 27 H 0.324 0.676 28 H 0.312 0.688 29 H 0.257 0.743 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 -12.953 2.991 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.047 4.047 4 C -0.183 4.183 5 C -0.117 4.117 6 C -0.152 4.152 7 C 0.154 3.846 8 H 0.035 0.965 9 N -0.345 5.345 10 C -0.583 4.583 11 H 0.060 0.940 12 C -0.166 4.166 13 N -0.513 5.513 14 Si 0.774 3.226 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.204 1.204 18 C -0.072 4.072 19 N -0.206 5.206 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.120 0.880 25 H 0.181 0.819 26 H 0.153 0.847 27 H 0.137 0.863 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.029 -12.429 2.416 13.623 hybrid contribution 0.872 0.144 -0.072 0.887 sum -4.157 -12.285 2.344 13.179 Atomic orbital electron populations 1.21626 0.94070 1.02450 1.01435 1.20518 0.97033 0.88640 1.04090 1.21813 0.94577 0.97330 0.90954 1.22250 0.98890 0.96324 1.00836 1.21738 0.98134 0.93947 0.97869 1.22391 0.96547 1.00920 0.95303 1.17797 0.89514 0.81461 0.95809 0.96463 1.59010 1.11032 1.59518 1.04978 1.21098 1.19342 0.94231 1.23618 0.94049 1.25640 0.98076 0.95613 0.97259 1.70218 1.40951 0.99544 1.40586 0.85696 0.79573 0.77861 0.79501 1.19882 1.20566 1.20406 1.22400 0.95380 0.91957 0.97455 1.67408 1.24843 1.03692 1.24668 0.93465 0.93619 0.90168 0.90108 0.87971 0.81913 0.84701 0.86345 0.87710 0.93391 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.77 71.98 0.70 -2.15 16 2 C -0.07 -1.42 6.33 29.85 0.19 -1.23 16 3 C 0.09 2.85 6.18 42.55 0.26 3.11 16 4 C -0.16 -4.90 9.71 22.36 0.22 -4.68 16 5 C -0.09 -3.30 9.82 22.47 0.22 -3.08 16 6 C -0.15 -6.23 4.89 -19.78 -0.10 -6.32 16 7 C 0.26 13.15 2.87 43.42 0.12 13.27 16 8 H 0.02 0.95 8.03 -2.39 -0.02 0.94 16 9 N -0.82 -38.44 8.37 -174.95 -1.46 -39.90 16 10 C -0.54 -30.04 8.71 25.60 0.22 -29.82 16 11 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 12 C 0.04 2.12 5.39 84.65 0.46 2.58 16 13 N -0.88 -51.10 12.77 21.45 0.27 -50.83 16 14 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 C 0.08 3.40 10.46 84.67 0.89 4.29 16 19 N -0.50 -18.31 9.88 -183.88 -1.82 -20.13 16 20 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.10 1.63 7.87 -2.38 -0.02 1.61 16 25 H 0.16 3.50 7.95 -2.91 -0.02 3.48 16 26 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 27 H 0.32 14.46 7.37 -89.69 -0.66 13.80 16 28 H 0.31 13.11 9.06 -89.69 -0.81 12.30 16 29 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.14 5.71 6.69 -2.91 -0.02 5.69 16 Total: -1.00 -63.42 259.46 1.88 -61.54 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.33 Total: 27.41 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 3.19 Total: -24.05 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -3.01 Total: -110.85 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.42 1.88 -61.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.460 kcal (2) G-P(sol) polarization free energy of solvation -63.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds