Wall clock time and date at job start Mon Mar 30 2020 02:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40077 * 126.03583 * 2 1 4 4 C 1.30842 * 108.20464 * 180.23323 * 3 2 1 5 5 C 1.50701 * 125.89939 * 179.81616 * 4 3 2 6 6 C 1.53000 * 117.49903 * 163.70290 * 5 4 3 7 7 C 1.52998 * 117.49884 * 95.04202 * 5 4 3 8 8 C 1.39865 * 108.19850 * 359.77760 * 4 3 2 9 9 C 1.34942 * 126.03540 * 179.84301 * 2 1 3 10 10 C 1.50706 * 126.13042 * 0.03482 * 9 2 1 11 11 C 1.50698 * 109.47294 * 264.71847 * 10 9 2 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99944 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47454 * 59.99696 * 15 13 11 17 17 H 1.48506 * 109.47297 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46926 * 299.99488 * 15 13 11 19 19 H 1.09001 * 109.47069 * 270.15565 * 1 2 3 20 20 H 1.09003 * 109.47290 * 30.15497 * 1 2 3 21 21 H 1.08999 * 109.46765 * 150.15542 * 1 2 3 22 22 H 1.08995 * 115.54919 * 309.37247 * 5 4 3 23 23 H 1.08996 * 117.49444 * 359.97438 * 6 5 4 24 24 H 1.08991 * 117.49674 * 145.01797 * 6 5 4 25 25 H 1.09003 * 117.49876 * 214.97805 * 7 5 4 26 26 H 1.08998 * 117.49733 * 359.97438 * 7 5 4 27 27 H 1.08000 * 126.03932 * 179.97438 * 8 4 3 28 28 H 1.09001 * 109.46953 * 24.71289 * 10 9 2 29 29 H 1.09000 * 109.47318 * 144.70887 * 10 9 2 30 30 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7321 -0.0051 5 6 4.7497 1.6236 -0.0108 6 6 6.0915 0.9916 0.3647 7 6 5.3956 1.9463 1.3381 8 6 3.5437 -0.6665 -0.0033 9 6 2.2589 -1.0912 0.0030 10 6 1.7973 -2.5259 0.0062 11 6 1.7673 -3.0408 1.4221 12 1 2.0542 -2.3940 2.2381 13 6 1.3746 -4.3378 1.6758 14 7 1.0258 -5.1256 0.6821 15 14 1.3380 -4.9763 3.4309 16 1 0.4013 -4.1535 4.2376 17 1 0.8831 -6.3899 3.4341 18 1 2.7002 -4.8929 4.0164 19 1 -0.3633 0.0028 1.0277 20 1 -0.3634 0.8886 -0.5162 21 1 -0.3633 -0.8914 -0.5114 22 1 4.7564 2.4041 -0.7716 23 1 6.0953 -0.0689 0.6163 24 1 6.9809 1.3566 -0.1488 25 1 5.8276 2.9390 1.4646 26 1 4.9414 1.5140 2.2297 27 1 4.4210 -1.2963 -0.0068 28 1 0.7976 -2.5868 -0.4238 29 1 2.4848 -3.1301 -0.5857 30 1 0.7491 -6.0379 0.8607 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136743.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:57 Heat of formation + Delta-G solvation = 87.842945 kcal Electronic energy + Delta-G solvation = -12939.659666 eV Core-core repulsion = 10737.090332 eV Total energy + Delta-G solvation = -2202.569334 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49670 -36.82530 -33.46658 -32.19357 -30.65653 -26.99959 -26.23791 -23.27922 -22.59529 -22.12923 -19.17641 -18.48563 -16.47780 -15.81254 -15.36099 -14.60011 -14.44627 -13.99402 -13.30080 -12.53461 -12.36331 -12.01295 -11.79670 -11.61596 -11.37352 -11.21776 -10.85717 -10.67336 -10.42988 -10.34185 -9.88215 -9.62534 -9.56299 -8.52633 -8.21160 -7.60916 -6.14965 -4.19559 2.69221 3.24185 3.27054 3.31165 3.34378 3.51158 4.14712 4.37269 4.86202 5.12991 5.19369 5.20873 5.39021 5.61952 5.74652 5.80587 5.95588 5.98749 6.01124 6.26715 6.33602 6.40081 6.70975 6.78049 7.32498 7.42754 7.49856 7.80379 7.86280 8.18890 8.54636 8.84181 9.45125 10.94890 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.008778 C = 0.007743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.729109 B = 3188.851885 C = 3615.080215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.378 5.378 3 N -0.323 5.323 4 C 0.095 3.905 5 C -0.070 4.070 6 C -0.168 4.168 7 C -0.170 4.170 8 C -0.292 4.292 9 C 0.141 3.859 10 C 0.072 3.928 11 C -0.515 4.515 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.275 1.275 19 H 0.069 0.931 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.112 0.888 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.137 0.863 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 9.144 -0.999 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.160 5.160 3 N -0.145 5.145 4 C -0.071 4.071 5 C -0.090 4.090 6 C -0.205 4.205 7 C -0.208 4.208 8 C -0.321 4.321 9 C 0.014 3.986 10 C 0.034 3.966 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.200 1.200 19 H 0.087 0.913 20 H 0.094 0.906 21 H 0.107 0.893 22 H 0.130 0.870 23 H 0.120 0.880 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.155 0.845 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.026 9.964 -1.052 10.466 hybrid contribution 0.354 -1.165 0.967 1.555 sum 3.380 8.799 -0.085 9.426 Atomic orbital electron populations 1.21681 0.75123 1.03386 1.03010 1.48300 1.06073 1.03519 1.58101 1.77039 1.00985 1.08520 1.27972 1.21160 0.91889 0.93281 1.00730 1.20023 0.89425 1.00066 0.99487 1.22995 0.94594 0.99837 1.03083 1.22958 1.03642 1.00297 0.93867 1.20885 0.96788 0.93283 1.21096 1.22094 0.90403 0.92087 0.94040 1.18067 0.97317 0.82643 0.98606 1.20918 1.45754 0.97144 0.91531 0.92437 1.24978 0.94959 0.96625 0.97491 1.69934 1.44648 1.07468 1.31073 0.86544 0.78695 0.77779 0.84398 1.20193 1.21093 1.19994 0.91277 0.90604 0.89305 0.87017 0.88003 0.88582 0.88750 0.88696 0.84476 0.95153 0.93562 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.88 11.27 59.85 0.67 2.56 16 2 N -0.38 -8.10 4.01 -63.88 -0.26 -8.35 16 3 N -0.32 -6.88 12.58 33.67 0.42 -6.46 16 4 C 0.09 1.89 6.85 -82.40 -0.56 1.32 16 5 C -0.07 -1.08 6.33 -91.77 -0.58 -1.66 16 6 C -0.17 -2.18 10.02 -26.69 -0.27 -2.45 16 7 C -0.17 -2.27 10.24 -26.69 -0.27 -2.55 16 8 C -0.29 -6.30 10.02 -40.02 -0.40 -6.70 16 9 C 0.14 3.26 6.12 -82.26 -0.50 2.76 16 10 C 0.07 1.83 5.26 -29.03 -0.15 1.68 16 11 C -0.51 -14.17 9.09 -34.44 -0.31 -14.48 16 12 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 15 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 20 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.09 1.47 6.97 -51.93 -0.36 1.11 16 22 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 23 H 0.10 1.42 7.15 -51.93 -0.37 1.05 16 24 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.14 2.79 7.39 -52.49 -0.39 2.41 16 28 H 0.03 0.78 6.94 -51.93 -0.36 0.42 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 262.90 15.07 3.96 3.96 Total: -1.00 -30.57 262.90 -6.62 -37.18 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.98 Total: 0.24 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.48 Total: -17.93 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.90 Total: -39.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.57 -6.62 -37.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136743.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.026 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds