Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40077 * 126.03583 * 2 1 4 4 C 1.30842 * 108.20464 * 180.23323 * 3 2 1 5 5 C 1.50701 * 125.89939 * 179.81616 * 4 3 2 6 6 C 1.53000 * 117.49903 * 163.70290 * 5 4 3 7 7 C 1.52998 * 117.49884 * 95.04202 * 5 4 3 8 8 C 1.39865 * 108.19850 * 359.77760 * 4 3 2 9 9 C 1.34942 * 126.03540 * 179.84301 * 2 1 3 10 10 C 1.50706 * 126.13042 * 0.03482 * 9 2 1 11 11 C 1.50698 * 109.47294 * 264.71847 * 10 9 2 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99944 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47454 * 59.99696 * 15 13 11 17 17 H 1.48506 * 109.47297 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46926 * 299.99488 * 15 13 11 19 19 H 1.09001 * 109.47069 * 270.15565 * 1 2 3 20 20 H 1.09003 * 109.47290 * 30.15497 * 1 2 3 21 21 H 1.08999 * 109.46765 * 150.15542 * 1 2 3 22 22 H 1.08995 * 115.54919 * 309.37247 * 5 4 3 23 23 H 1.08996 * 117.49444 * 359.97438 * 6 5 4 24 24 H 1.08991 * 117.49674 * 145.01797 * 6 5 4 25 25 H 1.09003 * 117.49876 * 214.97805 * 7 5 4 26 26 H 1.08998 * 117.49733 * 359.97438 * 7 5 4 27 27 H 1.08000 * 126.03932 * 179.97438 * 8 4 3 28 28 H 1.09001 * 109.46953 * 24.71289 * 10 9 2 29 29 H 1.09000 * 109.47318 * 144.70887 * 10 9 2 30 30 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7321 -0.0051 5 6 4.7497 1.6236 -0.0108 6 6 6.0915 0.9916 0.3647 7 6 5.3956 1.9463 1.3381 8 6 3.5437 -0.6665 -0.0033 9 6 2.2589 -1.0912 0.0030 10 6 1.7973 -2.5259 0.0062 11 6 1.7673 -3.0408 1.4221 12 1 2.0542 -2.3940 2.2381 13 6 1.3746 -4.3378 1.6758 14 7 1.0258 -5.1256 0.6821 15 14 1.3380 -4.9763 3.4309 16 1 0.4013 -4.1535 4.2376 17 1 0.8831 -6.3899 3.4341 18 1 2.7002 -4.8929 4.0164 19 1 -0.3633 0.0028 1.0277 20 1 -0.3634 0.8886 -0.5162 21 1 -0.3633 -0.8914 -0.5114 22 1 4.7564 2.4041 -0.7716 23 1 6.0953 -0.0689 0.6163 24 1 6.9809 1.3566 -0.1488 25 1 5.8276 2.9390 1.4646 26 1 4.9414 1.5140 2.2297 27 1 4.4210 -1.2963 -0.0068 28 1 0.7976 -2.5868 -0.4238 29 1 2.4848 -3.1301 -0.5857 30 1 0.7491 -6.0379 0.8607 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261136743.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = 70.037261 kcal Electronic energy + Delta-G solvation = -12940.431779 eV Core-core repulsion = 10737.090332 eV Total energy + Delta-G solvation = -2203.341447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12311 -37.99792 -35.50750 -33.74102 -32.54244 -28.91968 -27.68326 -25.27836 -23.96484 -23.18289 -20.81585 -19.96663 -18.60446 -17.49016 -16.61229 -16.45550 -16.03740 -15.21599 -14.90794 -14.41879 -14.19811 -13.54476 -13.34780 -13.24622 -12.98493 -12.68521 -12.51755 -12.28376 -11.99114 -11.76140 -11.60419 -11.40271 -11.06021 -10.64522 -9.81905 -9.31167 -8.26405 -6.39561 1.02852 1.39806 1.41154 1.49884 1.72208 1.88210 2.38967 3.00121 3.06153 3.55522 3.97047 4.03020 4.14512 4.23346 4.38937 4.45828 4.61920 4.68334 4.82691 4.89271 4.94628 5.10677 5.21323 5.26736 5.34203 5.60530 5.65977 5.85123 5.99406 6.26927 6.68787 6.89849 7.29420 8.83120 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.008778 C = 0.007743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.729109 B = 3188.851885 C = 3615.080215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.385 5.385 3 N -0.334 5.334 4 C 0.098 3.902 5 C -0.094 4.094 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.301 4.301 9 C 0.116 3.884 10 C 0.085 3.915 11 C -0.532 4.532 12 H 0.048 0.952 13 C 0.016 3.984 14 N -0.923 5.923 15 Si 0.963 3.037 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 H 0.073 0.927 20 H 0.104 0.896 21 H 0.088 0.912 22 H 0.131 0.869 23 H 0.087 0.913 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.075 0.925 27 H 0.141 0.859 28 H 0.020 0.980 29 H 0.025 0.975 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 10.243 -0.219 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.167 5.167 3 N -0.156 5.156 4 C -0.068 4.068 5 C -0.114 4.114 6 C -0.191 4.191 7 C -0.197 4.197 8 C -0.330 4.330 9 C -0.012 4.012 10 C 0.046 3.954 11 C -0.570 4.570 12 H 0.066 0.934 13 C -0.184 4.184 14 N -0.562 5.562 15 Si 0.788 3.212 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.195 1.195 19 H 0.092 0.908 20 H 0.123 0.877 21 H 0.107 0.893 22 H 0.149 0.851 23 H 0.106 0.894 24 H 0.147 0.853 25 H 0.144 0.856 26 H 0.094 0.906 27 H 0.159 0.841 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.871 11.072 -0.276 11.732 hybrid contribution 0.097 -1.478 0.690 1.634 sum 3.968 9.594 0.414 10.390 Atomic orbital electron populations 1.21938 0.73271 1.04823 1.03780 1.48600 1.07318 1.02960 1.57796 1.77008 1.01654 1.08551 1.28428 1.21796 0.92913 0.93136 0.98940 1.20249 0.88665 1.00799 1.01686 1.23104 0.94436 0.99171 1.02381 1.23038 1.02689 1.01935 0.92078 1.21111 0.96461 0.94570 1.20853 1.21836 0.91580 0.91588 0.96219 1.17752 0.96160 0.84114 0.97359 1.21113 1.46147 0.97560 0.92173 0.93398 1.25787 0.94273 0.96673 1.01648 1.70032 1.45085 1.07888 1.33154 0.85524 0.78902 0.77477 0.79328 1.19505 1.20148 1.19479 0.90803 0.87724 0.89347 0.85104 0.89441 0.85258 0.85553 0.90591 0.84074 0.96187 0.95670 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.48 11.27 127.77 1.44 4.92 16 2 N -0.38 -16.50 4.01 -356.01 -1.43 -17.93 16 3 N -0.33 -14.01 12.58 -47.38 -0.60 -14.60 16 4 C 0.10 3.82 6.85 43.10 0.30 4.12 16 5 C -0.09 -2.70 6.33 -11.54 -0.07 -2.77 16 6 C -0.15 -3.59 10.02 30.62 0.31 -3.28 16 7 C -0.16 -3.84 10.24 30.62 0.31 -3.53 16 8 C -0.30 -13.12 10.02 21.99 0.22 -12.90 16 9 C 0.12 5.45 6.12 41.41 0.25 5.70 16 10 C 0.08 4.44 5.26 29.10 0.15 4.60 16 11 C -0.53 -29.78 9.09 25.60 0.23 -29.55 16 12 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 13 C 0.02 0.87 5.46 84.65 0.46 1.33 16 14 N -0.92 -53.26 13.29 21.45 0.28 -52.97 16 15 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 20 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 21 H 0.09 2.97 6.97 -2.39 -0.02 2.95 16 22 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 23 H 0.09 2.31 7.15 -2.39 -0.02 2.30 16 24 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.14 5.85 7.39 -2.91 -0.02 5.83 16 28 H 0.02 1.06 6.94 -2.39 -0.02 1.05 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -65.08 262.90 5.01 -60.07 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.12 Total: 11.56 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 3.60 Total: -31.36 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -1.74 Total: -85.50 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.08 5.01 -60.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136743.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.106 kcal (2) G-P(sol) polarization free energy of solvation -65.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds