Wall clock time and date at job start Mon Mar 30 2020 02:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40088 * 126.03199 * 2 1 4 4 C 1.30835 * 108.20325 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.90166 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.47109 * 304.98210 * 5 4 3 7 7 H 1.08002 * 119.99602 * 359.97438 * 6 5 4 8 8 C 1.37868 * 119.99875 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00486 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99903 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46971 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47223 * 119.99664 * 10 8 6 13 13 H 1.48495 * 109.46874 * 239.99990 * 10 8 6 14 14 C 1.39871 * 108.20619 * 359.78136 * 4 3 2 15 15 C 1.34946 * 126.04118 * 180.02562 * 2 1 3 16 16 C 1.50701 * 126.12548 * 359.94631 * 15 2 1 17 17 C 1.53000 * 117.49727 * 144.99676 * 16 15 2 18 18 C 1.53002 * 60.02940 * 107.49982 * 17 16 15 19 19 H 1.09001 * 109.47066 * 269.96609 * 1 2 3 20 20 H 1.09000 * 109.47325 * 29.97264 * 1 2 3 21 21 H 1.09003 * 109.47076 * 149.97521 * 1 2 3 22 22 H 1.09006 * 109.47094 * 64.97704 * 5 4 3 23 23 H 1.08994 * 109.47406 * 184.97566 * 5 4 3 24 24 H 0.97003 * 120.00058 * 180.02562 * 9 8 6 25 25 H 1.07994 * 126.04777 * 180.22906 * 14 4 3 26 26 H 1.08999 * 115.54923 * 359.32875 * 16 15 2 27 27 H 1.09002 * 117.49833 * 215.00087 * 17 16 15 28 28 H 1.09002 * 117.49953 * 0.02562 * 17 16 15 29 29 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 30 30 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 -0.0006 5 6 4.7496 1.6238 -0.0002 6 6 4.6724 2.5786 -1.1637 7 1 3.8282 2.5430 -1.8363 8 6 5.6795 3.4974 -1.3694 9 7 6.7073 3.5411 -0.5500 10 14 5.5842 4.6804 -2.8120 11 1 4.3372 4.4279 -3.5776 12 1 5.5817 6.0771 -2.3075 13 1 6.7583 4.4761 -3.6979 14 6 3.5438 -0.6664 0.0041 15 6 2.2590 -1.0912 -0.0005 16 6 1.7974 -2.5258 0.0000 17 6 2.6388 -3.5388 -0.7790 18 6 2.6579 -3.5450 0.7509 19 1 -0.3633 -0.0006 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5142 22 1 4.7856 2.1886 0.9314 23 1 5.6481 1.0135 -0.0900 24 1 7.4157 4.1878 -0.6946 25 1 4.4211 -1.2961 0.0084 26 1 0.7174 -2.6721 0.0124 27 1 2.1122 -4.3516 -1.2791 28 1 3.5263 -3.1677 -1.2915 29 1 2.1439 -4.3621 1.2573 30 1 3.5576 -3.1777 1.2444 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261160746.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:15 Heat of formation + Delta-G solvation = 92.386451 kcal Electronic energy + Delta-G solvation = -12848.617038 eV Core-core repulsion = 10646.244725 eV Total energy + Delta-G solvation = -2202.372313 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59444 -36.91334 -33.74270 -32.28773 -29.38417 -28.51182 -25.58373 -23.16978 -22.83132 -22.37324 -19.18179 -18.57104 -16.52773 -16.14461 -14.88246 -14.87251 -14.43264 -14.04366 -13.39632 -12.59604 -12.45286 -12.10767 -11.83923 -11.65664 -11.53282 -11.24926 -10.81541 -10.61898 -10.56149 -10.50474 -9.83381 -9.51961 -9.21269 -8.38048 -8.06254 -7.72695 -5.95082 -3.95424 2.40720 3.14394 3.36942 3.43377 3.49543 3.67264 4.06937 4.54183 4.62050 4.81513 5.01912 5.04405 5.13309 5.41010 5.41660 5.60681 5.61080 5.73072 5.89475 6.02532 6.13357 6.39510 6.54581 6.81689 7.47571 7.61273 7.68880 7.73807 8.02674 8.40604 8.73275 9.08722 9.66891 11.16222 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.044195 B = 0.007575 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.399735 B = 3695.500275 C = 3975.520439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.392 5.392 3 N -0.294 5.294 4 C 0.119 3.881 5 C 0.088 3.912 6 C -0.501 4.501 7 H 0.058 0.942 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C -0.271 4.271 15 C 0.096 3.904 16 C -0.098 4.098 17 C -0.164 4.164 18 C -0.163 4.163 19 H 0.064 0.936 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.039 0.961 24 H 0.260 0.740 25 H 0.137 0.863 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.986 -12.952 1.293 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.174 5.174 3 N -0.115 5.115 4 C -0.047 4.047 5 C 0.049 3.951 6 C -0.540 4.540 7 H 0.077 0.923 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.300 4.300 15 C -0.031 4.031 16 C -0.118 4.118 17 C -0.202 4.202 18 C -0.201 4.201 19 H 0.083 0.917 20 H 0.102 0.898 21 H 0.094 0.906 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.155 0.845 26 H 0.126 0.874 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.795 -11.831 1.324 16.070 hybrid contribution 0.405 -0.023 -0.785 0.884 sum -10.389 -11.854 0.539 15.772 Atomic orbital electron populations 1.21597 0.76001 1.03485 1.02278 1.48446 1.05783 1.03806 1.59350 1.77535 1.02029 1.05135 1.26769 1.23253 0.94334 0.93432 0.93700 1.17848 0.86609 0.92393 0.98255 1.21120 1.05996 1.16138 1.10793 0.92323 1.24985 0.95375 0.97497 0.96661 1.69964 1.09988 1.36526 1.37328 0.86465 0.77889 0.80808 0.82461 1.19807 1.20992 1.21036 1.21119 0.95366 0.95328 1.18199 1.19957 0.91321 0.88085 1.03727 1.20342 0.97494 0.86402 1.07522 1.23061 1.02402 1.00265 0.94434 1.23056 1.02138 1.00163 0.94752 0.91745 0.89772 0.90643 0.94466 0.94322 0.93002 0.84539 0.87378 0.88495 0.87873 0.88501 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.43 11.21 59.85 0.67 2.10 16 2 N -0.39 -7.47 4.01 -63.88 -0.26 -7.73 16 3 N -0.29 -7.08 12.54 33.67 0.42 -6.65 16 4 C 0.12 2.93 6.43 -82.40 -0.53 2.40 16 5 C 0.09 2.42 5.55 -29.03 -0.16 2.26 16 6 C -0.50 -14.94 9.07 -34.44 -0.31 -15.25 16 7 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 10 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 C -0.27 -5.57 9.73 -40.01 -0.39 -5.96 16 15 C 0.10 1.70 6.62 -82.26 -0.54 1.16 16 16 C -0.10 -1.25 5.97 -91.74 -0.55 -1.79 16 17 C -0.16 -1.81 10.05 -26.73 -0.27 -2.08 16 18 C -0.16 -1.77 10.05 -26.69 -0.27 -2.04 16 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 20 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 21 H 0.07 0.76 7.24 -51.93 -0.38 0.38 16 22 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.04 1.07 8.12 -51.93 -0.42 0.65 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 26 H 0.11 1.14 7.26 -51.93 -0.38 0.77 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.10 1.26 7.97 -51.93 -0.41 0.85 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 264.15 15.07 3.98 3.98 Total: -1.00 -33.64 264.15 -6.66 -40.31 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.08 Total: -3.13 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.45 Total: -17.67 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.90 Total: -40.96 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.64 -6.66 -40.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160746.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.693 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds