Wall clock time and date at job start Mon Mar 30 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34007 * 125.98649 * 2 1 4 4 C 1.30901 * 109.29993 * 180.02562 * 3 2 1 5 5 N 1.34811 * 108.61372 * 359.87275 * 4 3 2 6 6 C 1.34562 * 125.98106 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.58252 * 0.06050 * 6 2 1 8 8 C 1.47016 * 111.18353 * 180.19358 * 5 4 3 9 9 C 1.54386 * 105.52516 * 342.88776 * 8 5 4 10 10 C 1.51572 * 141.44499 * 179.74243 * 4 3 2 11 11 H 1.09005 * 110.47252 * 315.36637 * 10 4 3 12 12 C 1.50700 * 110.47812 * 77.98677 * 10 4 3 13 13 H 1.07989 * 119.99924 * 118.55207 * 12 10 4 14 14 C 1.37878 * 119.99674 * 298.54466 * 12 10 4 15 15 N 1.31520 * 119.99749 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 120.00427 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.47061 * 89.99409 * 16 14 12 18 18 H 1.48502 * 109.47184 * 209.99468 * 16 14 12 19 19 H 1.48504 * 109.47002 * 329.99489 * 16 14 12 20 20 H 1.09009 * 109.47112 * 89.97282 * 1 2 3 21 21 H 1.08994 * 109.47808 * 209.97504 * 1 2 3 22 22 H 1.08999 * 109.46903 * 329.97831 * 1 2 3 23 23 H 1.08996 * 109.47560 * 269.97644 * 7 6 2 24 24 H 1.09000 * 109.47400 * 29.97643 * 7 6 2 25 25 H 1.09004 * 109.47395 * 149.97677 * 7 6 2 26 26 H 1.08994 * 110.23627 * 101.90138 * 8 5 4 27 27 H 1.08998 * 110.23683 * 223.87772 * 8 5 4 28 28 H 1.08998 * 110.96624 * 143.83701 * 9 8 5 29 29 H 1.08999 * 110.96977 * 267.59799 * 9 8 5 30 30 H 0.96997 * 119.99694 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2944 1.0843 0.0000 4 6 3.5483 0.7085 -0.0006 5 7 3.5936 -0.6389 0.0019 6 6 2.2976 -1.0889 0.0005 7 6 1.8460 -2.5266 -0.0001 8 6 4.9815 -1.1237 0.0061 9 6 5.8416 0.0814 -0.4317 10 6 4.9549 1.2730 -0.0052 11 1 5.0369 2.0865 -0.7261 12 6 5.3371 1.7477 1.3732 13 1 6.1740 1.2979 1.8864 14 6 4.6181 2.7563 1.9788 15 7 4.9513 3.1702 3.1819 16 14 3.1700 3.5340 1.0913 17 1 1.9287 2.7889 1.4219 18 1 3.0276 4.9483 1.5209 19 1 3.4025 3.4829 -0.3746 20 1 -0.3634 0.0005 -1.0278 21 1 -0.3634 -0.8901 0.5134 22 1 -0.3633 0.8898 0.5142 23 1 1.7367 -2.8736 1.0273 24 1 0.8883 -2.6065 -0.5144 25 1 2.5865 -3.1398 -0.5138 26 1 5.2655 -1.4454 1.0080 27 1 5.0960 -1.9452 -0.7011 28 1 6.7937 0.0942 0.0987 29 1 5.9977 0.0778 -1.5105 30 1 4.4452 3.8795 3.6081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166302.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:52 Heat of formation + Delta-G solvation = 64.522704 kcal Electronic energy + Delta-G solvation = -13738.369125 eV Core-core repulsion = 11534.788549 eV Total energy + Delta-G solvation = -2203.580576 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.69132 -36.11272 -32.85014 -31.88643 -30.77074 -28.71078 -26.78798 -24.48341 -23.83107 -20.16977 -19.15764 -19.01694 -17.10954 -15.41914 -15.11623 -14.09172 -13.83762 -13.67105 -13.10892 -12.62849 -12.54238 -12.22911 -12.10287 -12.05247 -11.67782 -11.60121 -11.23195 -10.97927 -10.55438 -9.87314 -9.68246 -9.47649 -8.85462 -8.68843 -8.16983 -7.18861 -6.08749 -4.18458 2.78631 3.47971 3.57908 3.76894 3.94610 3.98787 4.64177 4.81626 5.17880 5.26482 5.34678 5.44301 5.46725 5.61199 5.77228 5.81897 5.89598 6.02886 6.09973 6.12470 6.23927 6.31766 6.58323 6.65297 7.03100 7.23266 7.53550 7.68160 7.96256 8.36618 8.85159 9.01959 9.51772 10.99244 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.030987 B = 0.016240 C = 0.012080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.378262 B = 1723.715001 C = 2317.402264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.001 4.001 3 N -0.501 5.501 4 C 0.232 3.768 5 N -0.480 5.480 6 C -0.043 4.043 7 C -0.064 4.064 8 C 0.116 3.884 9 C -0.117 4.117 10 C 0.085 3.915 11 H 0.057 0.943 12 C -0.525 4.525 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.908 3.092 17 H -0.250 1.250 18 H -0.314 1.314 19 H -0.269 1.269 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 -9.887 -7.278 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.130 4.130 3 N -0.221 5.221 4 C -0.031 4.031 5 N -0.164 5.164 6 C -0.155 4.155 7 C -0.122 4.122 8 C -0.006 4.006 9 C -0.155 4.155 10 C 0.064 3.936 11 H 0.075 0.925 12 C -0.563 4.563 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.738 3.262 17 H -0.175 1.175 18 H -0.243 1.243 19 H -0.194 1.194 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.943 -9.242 -7.124 12.317 hybrid contribution -0.496 -0.452 -0.124 0.682 sum -4.439 -9.694 -7.247 12.892 Atomic orbital electron populations 1.19914 0.88515 1.01914 1.01212 1.20352 0.95724 0.87993 1.08938 1.69810 0.99511 1.29553 1.23230 1.25765 0.96207 0.82133 0.99010 1.46289 1.05061 1.10089 1.54919 1.20390 0.82225 0.96484 1.16390 1.20028 1.00821 0.89691 1.01666 1.22208 0.78099 0.98053 1.02239 1.22664 0.99165 0.93350 1.00296 1.18603 0.81412 0.93679 0.99906 0.92482 1.20738 1.16770 1.20027 0.98751 0.90231 1.25097 0.97343 0.95608 0.94538 1.69933 1.40460 1.28341 1.13962 0.86333 0.83992 0.75553 0.80317 1.17486 1.24320 1.19414 0.92186 0.92038 0.91637 0.91953 0.90868 0.92660 0.89905 0.91021 0.88531 0.91520 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.05 36.01 0.36 -0.60 16 2 C 0.00 -0.02 7.09 -82.94 -0.59 -0.61 16 3 N -0.50 -12.81 7.34 -6.82 -0.05 -12.86 16 4 C 0.23 5.72 6.41 -154.86 -0.99 4.73 16 5 N -0.48 -10.16 3.61 -107.74 -0.39 -10.55 16 6 C -0.04 -0.84 7.24 -81.49 -0.59 -1.43 16 7 C -0.06 -0.90 10.04 36.00 0.36 -0.54 16 8 C 0.12 1.99 7.77 -3.03 -0.02 1.97 16 9 C -0.12 -2.09 6.68 -25.20 -0.17 -2.26 16 10 C 0.09 2.03 2.39 -91.69 -0.22 1.81 16 11 H 0.06 1.38 7.32 -51.93 -0.38 1.00 16 12 C -0.53 -14.71 9.14 -34.44 -0.31 -15.03 16 13 H 0.08 2.32 7.81 -52.49 -0.41 1.91 16 14 C 0.08 2.37 5.45 -17.82 -0.10 2.27 16 15 N -0.89 -27.84 13.96 55.43 0.77 -27.07 16 16 Si 0.91 24.96 23.99 -169.99 -4.08 20.88 16 17 H -0.25 -7.08 6.26 56.52 0.35 -6.73 16 18 H -0.31 -8.57 7.11 56.52 0.40 -8.17 16 19 H -0.27 -7.32 6.58 56.52 0.37 -6.95 16 20 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 21 H 0.06 0.84 7.79 -51.93 -0.40 0.44 16 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.87 7.80 -51.93 -0.41 0.47 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.62 7.73 -51.93 -0.40 1.22 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 244.88 15.07 3.69 3.69 Total: -1.00 -34.39 244.88 -6.50 -40.89 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -4.17 Total: -5.29 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.27 Total: -9.68 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.33 Total: -50.48 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.08 Total: 20.88 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -34.39 -6.50 -40.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166302.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.411 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds