Wall clock time and date at job start Mon Mar 30 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34007 * 125.98649 * 2 1 4 4 C 1.30901 * 109.29993 * 180.02562 * 3 2 1 5 5 N 1.34811 * 108.61372 * 359.87275 * 4 3 2 6 6 C 1.34562 * 125.98106 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.58252 * 0.06050 * 6 2 1 8 8 C 1.47016 * 111.18353 * 180.19358 * 5 4 3 9 9 C 1.54386 * 105.52516 * 342.88776 * 8 5 4 10 10 C 1.51572 * 141.44499 * 179.74243 * 4 3 2 11 11 H 1.09005 * 110.47252 * 315.36637 * 10 4 3 12 12 C 1.50700 * 110.47812 * 77.98677 * 10 4 3 13 13 H 1.07989 * 119.99924 * 118.55207 * 12 10 4 14 14 C 1.37878 * 119.99674 * 298.54466 * 12 10 4 15 15 N 1.31520 * 119.99749 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 120.00427 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.47061 * 89.99409 * 16 14 12 18 18 H 1.48502 * 109.47184 * 209.99468 * 16 14 12 19 19 H 1.48504 * 109.47002 * 329.99489 * 16 14 12 20 20 H 1.09009 * 109.47112 * 89.97282 * 1 2 3 21 21 H 1.08994 * 109.47808 * 209.97504 * 1 2 3 22 22 H 1.08999 * 109.46903 * 329.97831 * 1 2 3 23 23 H 1.08996 * 109.47560 * 269.97644 * 7 6 2 24 24 H 1.09000 * 109.47400 * 29.97643 * 7 6 2 25 25 H 1.09004 * 109.47395 * 149.97677 * 7 6 2 26 26 H 1.08994 * 110.23627 * 101.90138 * 8 5 4 27 27 H 1.08998 * 110.23683 * 223.87772 * 8 5 4 28 28 H 1.08998 * 110.96624 * 143.83701 * 9 8 5 29 29 H 1.08999 * 110.96977 * 267.59799 * 9 8 5 30 30 H 0.96997 * 119.99694 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2944 1.0843 0.0000 4 6 3.5483 0.7085 -0.0006 5 7 3.5936 -0.6389 0.0019 6 6 2.2976 -1.0889 0.0005 7 6 1.8460 -2.5266 -0.0001 8 6 4.9815 -1.1237 0.0061 9 6 5.8416 0.0814 -0.4317 10 6 4.9549 1.2730 -0.0052 11 1 5.0369 2.0865 -0.7261 12 6 5.3371 1.7477 1.3732 13 1 6.1740 1.2979 1.8864 14 6 4.6181 2.7563 1.9788 15 7 4.9513 3.1702 3.1819 16 14 3.1700 3.5340 1.0913 17 1 1.9287 2.7889 1.4219 18 1 3.0276 4.9483 1.5209 19 1 3.4025 3.4829 -0.3746 20 1 -0.3634 0.0005 -1.0278 21 1 -0.3634 -0.8901 0.5134 22 1 -0.3633 0.8898 0.5142 23 1 1.7367 -2.8736 1.0273 24 1 0.8883 -2.6065 -0.5144 25 1 2.5865 -3.1398 -0.5138 26 1 5.2655 -1.4454 1.0080 27 1 5.0960 -1.9452 -0.7011 28 1 6.7937 0.0942 0.0987 29 1 5.9977 0.0778 -1.5105 30 1 4.4452 3.8795 3.6081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166302.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:51 Heat of formation + Delta-G solvation = 41.355519 kcal Electronic energy + Delta-G solvation = -13739.373729 eV Core-core repulsion = 11534.788549 eV Total energy + Delta-G solvation = -2204.585180 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.29476 -37.71260 -34.87877 -33.51990 -32.33322 -30.20607 -28.34971 -26.03380 -25.62213 -21.74860 -20.91939 -20.55862 -19.16926 -17.10581 -16.63046 -16.19525 -15.31909 -15.22304 -14.63875 -14.53255 -13.89126 -13.64930 -13.56441 -13.37472 -13.21307 -12.93799 -12.75206 -12.72197 -12.56928 -11.82554 -11.64810 -11.44797 -10.97922 -10.38345 -10.06815 -8.77521 -8.39910 -6.47054 1.22383 1.35466 1.54882 1.72155 2.04310 2.24795 2.40349 2.94868 3.38289 3.78208 3.91818 4.06806 4.21433 4.33115 4.43423 4.60060 4.69555 4.74867 4.85173 4.87805 5.00127 5.05053 5.08354 5.18654 5.27129 5.48893 5.67477 6.10403 6.11981 6.37180 6.63890 7.24138 7.36907 8.71881 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.030987 B = 0.016240 C = 0.012080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.378262 B = 1723.715001 C = 2317.402264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.041 4.041 3 N -0.543 5.543 4 C 0.188 3.812 5 N -0.479 5.479 6 C -0.028 4.028 7 C -0.061 4.061 8 C 0.111 3.889 9 C -0.106 4.106 10 C 0.073 3.927 11 H 0.047 0.953 12 C -0.512 4.512 13 H 0.061 0.939 14 C 0.031 3.969 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.317 1.317 19 H -0.271 1.271 20 H 0.079 0.921 21 H 0.092 0.908 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -12.650 -8.825 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.169 4.169 3 N -0.265 5.265 4 C -0.076 4.076 5 N -0.162 5.162 6 C -0.142 4.142 7 C -0.118 4.118 8 C -0.009 4.009 9 C -0.143 4.143 10 C 0.052 3.948 11 H 0.065 0.935 12 C -0.550 4.550 13 H 0.079 0.921 14 C -0.169 4.169 15 N -0.573 5.573 16 Si 0.796 3.204 17 H -0.193 1.193 18 H -0.247 1.247 19 H -0.196 1.196 20 H 0.098 0.902 21 H 0.111 0.889 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.447 -12.021 -8.689 15.485 hybrid contribution -0.333 0.307 0.312 0.550 sum -4.780 -11.714 -8.376 15.174 Atomic orbital electron populations 1.20018 0.85737 1.02628 1.02703 1.21189 0.97815 0.87726 1.10186 1.69606 1.00693 1.32247 1.23950 1.25475 0.95905 0.84033 1.02157 1.46600 1.06816 1.09112 1.53692 1.21296 0.81270 0.98749 1.12867 1.20226 1.02586 0.85936 1.03099 1.22483 0.75885 0.98841 1.03642 1.22665 0.98452 0.90785 1.02437 1.18584 0.83191 0.95998 0.97015 0.93507 1.21085 1.15090 1.18519 1.00298 0.92111 1.25700 0.99267 0.96843 0.95066 1.70017 1.42032 1.29860 1.15401 0.85457 0.81450 0.74249 0.79281 1.19287 1.24747 1.19589 0.90244 0.88887 0.93333 0.90783 0.88278 0.90573 0.89970 0.86245 0.87689 0.88273 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.65 10.05 71.24 0.72 -0.94 16 2 C -0.04 -1.71 7.09 41.38 0.29 -1.42 16 3 N -0.54 -27.65 7.34 -175.48 -1.29 -28.94 16 4 C 0.19 9.11 6.41 138.36 0.89 9.99 16 5 N -0.48 -19.02 3.61 -494.77 -1.79 -20.81 16 6 C -0.03 -1.03 7.24 40.88 0.30 -0.73 16 7 C -0.06 -1.40 10.04 71.23 0.72 -0.68 16 8 C 0.11 3.43 7.77 86.75 0.67 4.11 16 9 C -0.11 -3.50 6.68 31.59 0.21 -3.29 16 10 C 0.07 3.45 2.39 -11.49 -0.03 3.42 16 11 H 0.05 2.28 7.32 -2.38 -0.02 2.26 16 12 C -0.51 -29.05 9.14 25.60 0.23 -28.82 16 13 H 0.06 3.60 7.81 -2.92 -0.02 3.58 16 14 C 0.03 1.91 5.45 84.65 0.46 2.37 16 15 N -0.93 -60.08 13.96 21.45 0.30 -59.78 16 16 Si 0.96 53.83 23.99 68.60 1.65 55.48 16 17 H -0.27 -15.47 6.26 99.48 0.62 -14.84 16 18 H -0.32 -17.49 7.11 99.48 0.71 -16.78 16 19 H -0.27 -14.88 6.58 99.48 0.65 -14.23 16 20 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 21 H 0.09 2.22 7.79 -2.39 -0.02 2.21 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.10 1.80 7.80 -2.39 -0.02 1.78 16 25 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.10 3.28 7.73 -2.39 -0.02 3.26 16 29 H 0.10 2.64 8.14 -2.39 -0.02 2.63 16 30 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -77.17 244.88 4.31 -72.86 By element: Atomic # 1 Polarization: -3.81 SS G_CDS: 0.98 Total: -2.83 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.46 Total: -15.98 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -2.77 Total: -109.53 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 1.65 Total: 55.48 kcal Total: -77.17 4.31 -72.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166302.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.215 kcal (2) G-P(sol) polarization free energy of solvation -77.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds