Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99823 * 2 1 4 4 N 1.46506 * 109.46816 * 124.99966 * 3 2 1 5 5 N 1.40085 * 126.03688 * 269.99766 * 4 3 2 6 6 C 1.30839 * 108.20364 * 180.02562 * 5 4 3 7 7 C 1.39875 * 108.20184 * 0.02562 * 6 5 4 8 8 C 1.34949 * 126.03292 * 89.99911 * 4 3 2 9 9 C 1.50692 * 126.12911 * 359.96407 * 8 4 3 10 10 H 1.08995 * 109.47754 * 335.01908 * 9 8 4 11 11 C 1.53011 * 109.47161 * 95.01963 * 9 8 4 12 12 C 1.50701 * 109.46984 * 215.01525 * 9 8 4 13 13 H 1.07992 * 120.00332 * 359.97438 * 12 9 8 14 14 C 1.37876 * 120.00077 * 180.02562 * 12 9 8 15 15 N 1.31521 * 119.99989 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00364 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47161 * 59.99339 * 16 14 12 18 18 H 1.48500 * 109.47487 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46926 * 299.99612 * 16 14 12 20 20 H 1.07997 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.99999 * 179.97438 * 1 2 3 22 22 H 1.07997 * 119.99768 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47288 * 5.00149 * 3 2 1 24 24 H 1.09000 * 109.47185 * 244.99442 * 3 2 1 25 25 H 1.08003 * 125.89926 * 180.26060 * 6 5 4 26 26 H 1.08001 * 126.03559 * 179.97438 * 7 6 5 27 27 H 1.08994 * 109.47011 * 180.02562 * 11 9 8 28 28 H 1.08998 * 109.46498 * 299.99484 * 11 9 8 29 29 H 1.08995 * 109.46831 * 59.99380 * 11 9 8 30 30 H 0.96998 * 119.99928 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 7 2.7134 1.8109 2.4177 6 6 3.7887 1.6701 3.1497 7 6 4.7870 1.0982 2.3541 8 6 4.2720 0.8994 1.1187 9 6 4.9963 0.3028 -0.0604 10 1 4.2728 -0.1365 -0.7471 11 6 5.7846 1.3977 -0.7821 12 6 5.9448 -0.7649 0.4206 13 1 6.0163 -0.9888 1.4746 14 6 6.7222 -1.4554 -0.4850 15 7 6.6355 -1.1825 -1.7686 16 14 7.8974 -2.7794 0.1111 17 1 7.1319 -3.8423 0.8107 18 1 8.6113 -3.3673 -1.0508 19 1 8.8829 -2.1814 1.0473 20 1 -0.5399 0.9353 0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3586 2.1316 0.0896 24 1 2.6214 1.4026 -0.9313 25 1 3.8873 1.9441 4.1897 26 1 5.7912 0.8572 2.6703 27 1 6.3081 0.9663 -1.6352 28 1 5.0986 2.1700 -1.1300 29 1 6.5082 1.8370 -0.0954 30 1 7.1821 -1.6685 -2.4058 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166569.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = 87.140251 kcal Electronic energy + Delta-G solvation = -13247.854013 eV Core-core repulsion = 11045.254208 eV Total energy + Delta-G solvation = -2202.599805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41018 -35.02040 -34.41535 -31.40462 -30.66575 -27.82008 -25.73162 -25.18309 -21.95782 -20.38147 -19.94072 -18.56773 -16.06836 -16.04895 -15.07530 -14.57086 -14.35711 -13.32340 -13.20940 -12.82159 -12.69578 -12.05677 -11.55288 -11.45454 -11.11148 -10.96004 -10.88381 -10.62554 -10.28927 -10.05989 -9.59527 -9.36146 -9.04633 -8.51492 -8.36471 -7.56292 -6.08885 -4.14472 2.24335 2.77915 3.29727 3.33888 3.35902 3.43243 3.73518 4.38786 5.02545 5.12668 5.23960 5.41755 5.70611 5.74324 5.87691 6.04035 6.36723 6.63531 6.71005 6.73985 6.81481 6.90422 7.02930 7.10554 7.50264 7.57679 7.75592 7.83490 8.03335 8.28666 8.57161 8.87580 9.50388 10.97911 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.032054 B = 0.010308 C = 0.009196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.328099 B = 2715.644747 C = 3044.087393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.163 3.837 4 N -0.379 5.379 5 N -0.329 5.329 6 C 0.036 3.964 7 C -0.283 4.283 8 C 0.138 3.862 9 C 0.097 3.903 10 H 0.037 0.963 11 C -0.130 4.130 12 C -0.506 4.506 13 H 0.064 0.936 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.096 0.904 21 H 0.099 0.901 22 H 0.118 0.882 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.171 0.829 26 H 0.142 0.858 27 H 0.091 0.909 28 H 0.006 0.994 29 H 0.034 0.966 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 3.136 2.201 7.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.181 4.181 3 C 0.042 3.958 4 N -0.162 5.162 5 N -0.150 5.150 6 C -0.149 4.149 7 C -0.312 4.312 8 C 0.011 3.989 9 C 0.077 3.923 10 H 0.055 0.945 11 C -0.188 4.188 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.201 1.201 20 H 0.114 0.886 21 H 0.118 0.882 22 H 0.136 0.864 23 H 0.106 0.894 24 H 0.119 0.881 25 H 0.188 0.812 26 H 0.159 0.841 27 H 0.109 0.891 28 H 0.025 0.975 29 H 0.053 0.947 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.512 3.499 1.900 8.502 hybrid contribution 1.491 -1.079 0.348 1.873 sum -6.021 2.420 2.248 6.867 Atomic orbital electron populations 1.23792 0.95540 1.01807 1.00699 1.23325 0.96249 0.99027 0.99453 1.20589 0.91777 0.96185 0.87259 1.48504 1.09644 1.49418 1.08611 1.77120 1.23912 1.24056 0.89900 1.23681 0.91699 1.00062 0.99496 1.21147 1.01849 1.14674 0.93505 1.22173 0.83800 0.93897 0.99028 1.17582 0.93661 0.93247 0.87860 0.94531 1.21764 0.98979 0.96026 1.02052 1.21044 1.21716 1.17770 0.93954 0.91796 1.24942 0.97020 0.97143 0.94832 1.69861 1.40647 1.41477 1.01042 0.86563 0.80970 0.81808 0.78158 1.20236 1.21284 1.20090 0.88559 0.88224 0.86425 0.89359 0.88121 0.81243 0.84064 0.89075 0.97493 0.94730 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 14.32 29.01 0.42 -1.95 16 2 C -0.16 -2.57 9.85 -36.03 -0.35 -2.93 16 3 C 0.16 2.76 6.47 -5.19 -0.03 2.73 16 4 N -0.38 -7.80 3.60 -58.31 -0.21 -8.01 16 5 N -0.33 -6.76 12.58 30.63 0.39 -6.38 16 6 C 0.04 0.69 12.03 -17.36 -0.21 0.49 16 7 C -0.28 -6.07 9.70 -40.01 -0.39 -6.46 16 8 C 0.14 3.10 5.85 -82.27 -0.48 2.62 16 9 C 0.10 2.36 2.32 -92.92 -0.22 2.15 16 10 H 0.04 0.94 7.49 -51.93 -0.39 0.55 16 11 C -0.13 -3.06 8.95 37.16 0.33 -2.73 16 12 C -0.51 -13.45 8.25 -34.44 -0.28 -13.74 16 13 H 0.06 1.70 6.83 -52.49 -0.36 1.34 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.40 11.32 55.43 0.63 -23.78 16 16 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 21 H 0.10 1.15 8.06 -52.48 -0.42 0.73 16 22 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 23 H 0.09 1.30 7.79 -51.93 -0.40 0.90 16 24 H 0.10 1.66 7.55 -51.93 -0.39 1.27 16 25 H 0.17 2.56 8.06 -52.48 -0.42 2.13 16 26 H 0.14 2.97 7.65 -52.49 -0.40 2.57 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 28 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 261.36 15.07 3.94 3.94 Total: -1.00 -28.86 261.36 -5.51 -34.37 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.92 Total: 2.34 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.31 Total: -18.26 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.80 Total: -38.17 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.86 -5.51 -34.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166569.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.512 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds