Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99823 * 2 1 4 4 N 1.46506 * 109.46816 * 124.99966 * 3 2 1 5 5 N 1.40085 * 126.03688 * 269.99766 * 4 3 2 6 6 C 1.30839 * 108.20364 * 180.02562 * 5 4 3 7 7 C 1.39875 * 108.20184 * 0.02562 * 6 5 4 8 8 C 1.34949 * 126.03292 * 89.99911 * 4 3 2 9 9 C 1.50692 * 126.12911 * 359.96407 * 8 4 3 10 10 H 1.08995 * 109.47754 * 335.01908 * 9 8 4 11 11 C 1.53011 * 109.47161 * 95.01963 * 9 8 4 12 12 C 1.50701 * 109.46984 * 215.01525 * 9 8 4 13 13 H 1.07992 * 120.00332 * 359.97438 * 12 9 8 14 14 C 1.37876 * 120.00077 * 180.02562 * 12 9 8 15 15 N 1.31521 * 119.99989 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00364 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47161 * 59.99339 * 16 14 12 18 18 H 1.48500 * 109.47487 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46926 * 299.99612 * 16 14 12 20 20 H 1.07997 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.99999 * 179.97438 * 1 2 3 22 22 H 1.07997 * 119.99768 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47288 * 5.00149 * 3 2 1 24 24 H 1.09000 * 109.47185 * 244.99442 * 3 2 1 25 25 H 1.08003 * 125.89926 * 180.26060 * 6 5 4 26 26 H 1.08001 * 126.03559 * 179.97438 * 7 6 5 27 27 H 1.08994 * 109.47011 * 180.02562 * 11 9 8 28 28 H 1.08998 * 109.46498 * 299.99484 * 11 9 8 29 29 H 1.08995 * 109.46831 * 59.99380 * 11 9 8 30 30 H 0.96998 * 119.99928 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 7 2.7134 1.8109 2.4177 6 6 3.7887 1.6701 3.1497 7 6 4.7870 1.0982 2.3541 8 6 4.2720 0.8994 1.1187 9 6 4.9963 0.3028 -0.0604 10 1 4.2728 -0.1365 -0.7471 11 6 5.7846 1.3977 -0.7821 12 6 5.9448 -0.7649 0.4206 13 1 6.0163 -0.9888 1.4746 14 6 6.7222 -1.4554 -0.4850 15 7 6.6355 -1.1825 -1.7686 16 14 7.8974 -2.7794 0.1111 17 1 7.1319 -3.8423 0.8107 18 1 8.6113 -3.3673 -1.0508 19 1 8.8829 -2.1814 1.0473 20 1 -0.5399 0.9353 0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3586 2.1316 0.0896 24 1 2.6214 1.4026 -0.9313 25 1 3.8873 1.9441 4.1897 26 1 5.7912 0.8572 2.6703 27 1 6.3081 0.9663 -1.6352 28 1 5.0986 2.1700 -1.1300 29 1 6.5082 1.8370 -0.0954 30 1 7.1821 -1.6685 -2.4058 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166569.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = 70.911423 kcal Electronic energy + Delta-G solvation = -13248.557748 eV Core-core repulsion = 11045.254208 eV Total energy + Delta-G solvation = -2203.303540 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.99931 -36.42800 -36.21215 -33.22534 -32.19188 -29.54952 -27.22476 -27.08120 -23.80048 -21.88498 -21.27999 -20.14969 -18.07905 -17.69804 -16.48806 -16.30613 -15.87348 -14.97900 -14.68737 -14.43564 -14.23722 -13.74248 -13.41667 -12.87163 -12.86172 -12.78966 -12.48255 -12.26043 -12.19983 -11.86252 -11.33247 -11.03397 -10.55767 -10.47911 -9.98258 -9.22149 -8.12566 -6.24631 0.99813 1.21682 1.45197 1.45763 1.53471 1.99072 2.12008 2.45330 3.17483 3.75233 3.89387 4.14044 4.16359 4.39475 4.54443 4.65433 4.87871 4.93204 4.99585 5.07680 5.12952 5.35273 5.57398 5.60648 5.64716 5.81079 5.94177 5.98629 6.18760 6.41050 6.80178 6.97737 7.43080 8.93257 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.032054 B = 0.010308 C = 0.009196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.328099 B = 2715.644747 C = 3044.087393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.198 4.198 3 C 0.158 3.842 4 N -0.381 5.381 5 N -0.336 5.336 6 C 0.044 3.956 7 C -0.296 4.296 8 C 0.114 3.886 9 C 0.101 3.899 10 H 0.015 0.985 11 C -0.119 4.119 12 C -0.523 4.523 13 H 0.058 0.942 14 C 0.019 3.981 15 N -0.915 5.915 16 Si 0.956 3.044 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.270 1.270 20 H 0.120 0.880 21 H 0.117 0.883 22 H 0.090 0.910 23 H 0.113 0.887 24 H 0.095 0.905 25 H 0.212 0.788 26 H 0.139 0.861 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 3.392 3.150 8.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.217 4.217 3 C 0.038 3.962 4 N -0.163 5.163 5 N -0.157 5.157 6 C -0.141 4.141 7 C -0.325 4.325 8 C -0.013 4.013 9 C 0.081 3.919 10 H 0.033 0.967 11 C -0.177 4.177 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.782 3.218 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.195 1.195 20 H 0.138 0.862 21 H 0.135 0.865 22 H 0.108 0.892 23 H 0.131 0.869 24 H 0.113 0.887 25 H 0.228 0.772 26 H 0.157 0.843 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.459 3.761 2.841 9.684 hybrid contribution 1.678 -1.145 0.052 2.032 sum -6.781 2.616 2.893 7.823 Atomic orbital electron populations 1.24104 0.94352 1.03767 0.95911 1.23091 0.97245 0.97492 1.03910 1.20832 0.91742 0.97629 0.86007 1.48776 1.09386 1.48790 1.09386 1.77080 1.24477 1.24158 0.89984 1.24250 0.90230 0.98678 1.00981 1.21309 1.02400 1.15077 0.93683 1.21927 0.85119 0.95402 0.98856 1.17367 0.93063 0.93088 0.88363 0.96686 1.21596 0.98967 0.96140 1.01010 1.21299 1.22386 1.18679 0.93782 0.92391 1.25652 0.98434 0.99014 0.94968 1.69973 1.41287 1.42277 1.01839 0.85636 0.79082 0.79320 0.77798 1.20042 1.20807 1.19470 0.86197 0.86454 0.89195 0.86928 0.88722 0.77152 0.84327 0.91159 0.95677 0.95020 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 14.32 67.78 0.97 -2.41 16 2 C -0.20 -6.21 9.85 25.64 0.25 -5.96 16 3 C 0.16 5.24 6.47 85.63 0.55 5.79 16 4 N -0.38 -15.44 3.60 -338.40 -1.22 -16.66 16 5 N -0.34 -13.19 12.58 -57.02 -0.72 -13.91 16 6 C 0.04 1.60 12.03 85.24 1.03 2.62 16 7 C -0.30 -12.52 9.70 21.99 0.21 -12.30 16 8 C 0.11 5.17 5.85 41.40 0.24 5.41 16 9 C 0.10 5.07 2.32 -12.28 -0.03 5.04 16 10 H 0.02 0.81 7.49 -2.39 -0.02 0.79 16 11 C -0.12 -5.68 8.95 71.99 0.64 -5.04 16 12 C -0.52 -28.26 8.25 25.60 0.21 -28.05 16 13 H 0.06 3.13 6.83 -2.91 -0.02 3.11 16 14 C 0.02 1.00 5.30 84.65 0.45 1.44 16 15 N -0.91 -50.82 11.32 21.45 0.24 -50.57 16 16 Si 0.96 42.74 29.54 68.60 2.03 44.76 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H 0.12 2.28 7.84 -2.91 -0.02 2.26 16 21 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 22 H 0.09 3.28 8.06 -2.91 -0.02 3.26 16 23 H 0.11 3.09 7.79 -2.39 -0.02 3.08 16 24 H 0.09 3.16 7.55 -2.39 -0.02 3.14 16 25 H 0.21 5.61 8.06 -2.91 -0.02 5.59 16 26 H 0.14 5.81 7.65 -2.91 -0.02 5.79 16 27 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 28 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -61.22 261.36 5.98 -55.24 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.11 Total: 14.58 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 4.53 Total: -33.45 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.69 Total: -81.14 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -61.22 5.98 -55.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166569.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.152 kcal (2) G-P(sol) polarization free energy of solvation -61.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds