Wall clock time and date at job start Mon Mar 30 2020 02:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.73457 * 2 1 4 4 C 1.53474 * 109.78168 * 120.69471 * 2 1 3 5 5 C 1.53461 * 109.38510 * 168.43412 * 4 2 1 6 6 C 1.53300 * 109.48834 * 290.31733 * 5 4 2 7 7 N 1.46409 * 108.83134 * 50.51886 * 6 5 4 8 8 C 1.36872 * 128.48000 * 162.72651 * 7 6 5 9 9 C 1.39992 * 126.04827 * 0.07131 * 8 7 6 10 10 H 1.08002 * 120.00140 * 0.02562 * 9 8 7 11 11 C 1.40238 * 119.99791 * 180.02562 * 9 8 7 12 12 N 1.30685 * 120.00093 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99928 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47103 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47622 * 119.99706 * 13 11 9 16 16 H 1.48505 * 109.46974 * 239.99690 * 13 11 9 17 17 N 1.33264 * 107.90497 * 180.11179 * 8 7 6 18 18 C 1.33049 * 109.29039 * 359.95570 * 17 8 7 19 19 C 1.35503 * 108.42176 * 359.97438 * 18 17 8 20 20 H 1.09005 * 109.47150 * 180.66566 * 1 2 3 21 21 H 1.09001 * 109.46985 * 300.66042 * 1 2 3 22 22 H 1.08998 * 109.47499 * 60.66344 * 1 2 3 23 23 H 1.08997 * 109.49980 * 288.36701 * 4 2 1 24 24 H 1.09006 * 109.50115 * 48.43063 * 4 2 1 25 25 H 1.08999 * 109.64203 * 170.23965 * 5 4 2 26 26 H 1.09001 * 109.41356 * 50.24767 * 5 4 2 27 27 H 1.09002 * 109.59783 * 290.67429 * 6 5 4 28 28 H 1.09006 * 109.59801 * 170.36137 * 6 5 4 29 29 H 0.96999 * 119.99923 * 180.02562 * 12 11 9 30 30 H 1.07998 * 125.78727 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0495 -0.7372 1.2418 5 6 3.5564 -0.9864 1.0931 6 6 3.7962 -2.0313 -0.0027 7 7 3.0580 -1.6350 -1.2033 8 6 3.2265 -2.0715 -2.4896 9 6 4.1669 -3.0134 -2.9233 10 1 4.8442 -3.4663 -2.2144 11 6 4.2295 -3.3690 -4.2785 12 7 3.4096 -2.8214 -5.1362 13 14 5.4838 -4.6264 -4.8572 14 1 6.2873 -5.0934 -3.6989 15 1 4.7803 -5.7817 -5.4700 16 1 6.3815 -4.0034 -5.8628 17 7 2.3377 -1.4404 -3.2561 18 6 1.6107 -0.6200 -2.5020 19 6 2.0390 -0.7240 -1.2206 20 1 -0.3634 -1.0276 0.0119 21 1 -0.3633 0.5241 0.8840 22 1 -0.3634 0.5035 -0.8958 23 1 1.8680 -0.1294 2.1282 24 1 1.5311 -1.6908 1.3423 25 1 3.9624 -1.3506 2.0368 26 1 4.0525 -0.0549 0.8208 27 1 3.4449 -3.0054 0.3377 28 1 4.8611 -2.0855 -0.2295 29 1 3.4526 -3.0676 -6.0734 30 1 0.8143 0.0201 -2.8518 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168918.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:16 Heat of formation + Delta-G solvation = 18.515509 kcal Electronic energy + Delta-G solvation = -13533.650744 eV Core-core repulsion = 11328.075146 eV Total energy + Delta-G solvation = -2205.575597 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.14876 -37.47774 -35.19816 -34.47402 -31.09150 -30.12474 -27.35046 -26.57291 -23.27140 -22.48467 -21.82082 -19.49427 -18.65502 -17.39406 -16.38095 -16.03598 -15.39749 -14.86395 -14.69989 -14.38015 -14.27352 -13.71589 -13.39315 -13.16172 -12.90330 -12.60593 -12.39722 -12.23053 -11.93719 -11.84432 -11.45269 -11.40079 -11.06999 -9.76936 -9.71974 -8.88595 -8.32184 -6.26007 1.34771 1.41346 1.57744 1.83022 2.25785 2.68117 2.75184 3.61461 3.82873 3.87895 3.96869 4.21200 4.42094 4.52900 4.63067 4.71740 4.80904 4.85727 4.89883 4.98189 5.10433 5.18913 5.27857 5.32185 5.47079 5.53707 5.74631 6.28078 6.32447 6.70619 7.02632 7.43081 8.31109 8.64749 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.050633 B = 0.010214 C = 0.008728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.865926 B = 2740.784083 C = 3207.466380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.003 4.003 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.119 4.119 6 C 0.112 3.888 7 N -0.504 5.504 8 C 0.335 3.665 9 C -0.494 4.494 10 H 0.085 0.915 11 C 0.029 3.971 12 N -0.796 5.796 13 Si 0.995 3.005 14 H -0.252 1.252 15 H -0.269 1.269 16 H -0.269 1.269 17 N -0.566 5.566 18 C -0.060 4.060 19 C -0.109 4.109 20 H 0.039 0.961 21 H 0.084 0.916 22 H 0.049 0.951 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.111 0.889 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.274 0.726 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 1.923 11.912 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.022 4.022 3 H 0.093 0.907 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.011 4.011 7 N -0.193 5.193 8 C 0.089 3.911 9 C -0.534 4.534 10 H 0.103 0.897 11 C -0.189 4.189 12 N -0.422 5.422 13 Si 0.815 3.185 14 H -0.175 1.175 15 H -0.194 1.194 16 H -0.194 1.194 17 N -0.289 5.289 18 C -0.210 4.210 19 C -0.222 4.222 20 H 0.058 0.942 21 H 0.103 0.897 22 H 0.068 0.932 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.129 0.871 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.166 1.834 11.005 11.158 hybrid contribution 0.413 -0.384 -0.090 0.571 sum 0.579 1.450 10.915 11.026 Atomic orbital electron populations 1.21680 0.93379 1.01223 1.02259 1.19649 0.96073 0.97144 0.89368 0.90727 1.21730 0.94673 1.00693 0.97621 1.21889 0.97717 0.98084 0.98008 1.21735 0.96103 0.98991 0.84235 1.45571 1.30012 1.35823 1.07913 1.20426 0.96072 0.96157 0.78404 1.18513 1.17138 1.22775 0.94938 0.89718 1.26787 0.97907 0.98255 0.95986 1.70179 1.32522 1.36172 1.03363 0.84996 0.77511 0.77169 0.78850 1.17505 1.19406 1.19384 1.71324 1.11336 1.14875 1.31336 1.22035 1.03715 1.04157 0.91130 1.21218 0.99399 1.04023 0.97564 0.94213 0.89733 0.93223 0.88162 0.92629 0.87072 0.91928 0.91742 0.91137 0.91552 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 8.97 71.98 0.65 -2.97 16 2 C 0.00 -0.09 3.12 -11.36 -0.04 -0.13 16 3 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.11 -2.89 5.29 30.91 0.16 -2.73 16 5 C -0.12 -3.25 5.96 30.85 0.18 -3.06 16 6 C 0.11 4.17 6.66 86.50 0.58 4.75 16 7 N -0.50 -24.89 3.19 -506.74 -1.62 -26.50 16 8 C 0.33 19.98 7.46 133.73 1.00 20.98 16 9 C -0.49 -28.57 9.13 23.18 0.21 -28.36 16 10 H 0.08 4.50 7.74 -2.91 -0.02 4.48 16 11 C 0.03 1.60 5.50 85.35 0.47 2.07 16 12 N -0.80 -47.81 11.90 21.88 0.26 -47.55 16 13 Si 0.99 41.10 29.56 68.60 2.03 43.13 16 14 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 15 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 17 N -0.57 -35.65 9.43 -194.83 -1.84 -37.49 16 18 C -0.06 -3.24 11.29 83.88 0.95 -2.30 16 19 C -0.11 -5.06 6.13 41.19 0.25 -4.81 16 20 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 21 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.05 1.46 7.76 -2.39 -0.02 1.44 16 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.05 1.55 8.09 -2.38 -0.02 1.54 16 25 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 1.76 8.12 -2.39 -0.02 1.75 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 28 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.27 14.94 8.29 -92.71 -0.77 14.17 16 30 H 0.14 6.89 7.86 -2.91 -0.02 6.87 16 Total: -1.00 -74.01 249.76 4.36 -69.65 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.11 Total: 15.31 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.41 Total: -16.55 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.19 Total: -111.54 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -74.01 4.36 -69.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168918.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.166 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds