Wall clock time and date at job start Mon Mar 30 2020 02:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47168 * 2 1 4 4 C 1.38618 * 120.44772 * 125.00086 * 3 2 1 5 5 C 1.38573 * 118.39629 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.44797 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47551 * 204.99814 * 6 5 4 8 8 C 1.52996 * 109.47211 * 325.00313 * 6 5 4 9 9 C 1.50702 * 109.46869 * 84.99869 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.32349 * 119.10804 * 0.27095 * 5 4 3 18 18 C 1.31783 * 120.81674 * 359.44623 * 17 5 4 19 19 N 1.31810 * 121.75044 * 0.56816 * 18 17 5 20 20 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47600 * 300.00374 * 1 2 3 22 22 H 1.09007 * 109.47333 * 60.00500 * 1 2 3 23 23 H 1.08995 * 109.47084 * 239.99661 * 2 1 3 24 24 H 1.09002 * 109.46868 * 119.99559 * 2 1 3 25 25 H 1.07993 * 120.80309 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.47094 * 179.97438 * 8 6 5 27 27 H 1.09003 * 109.46851 * 299.99806 * 8 6 5 28 28 H 1.09003 * 109.47532 * 59.99881 * 8 6 5 29 29 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 30 30 H 1.07998 * 119.12299 * 180.26335 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8546 0.9789 5 6 3.3471 3.1699 0.9386 6 6 4.3039 3.6904 1.9800 7 1 4.1902 4.7706 2.0704 8 6 3.9999 3.0312 3.3268 9 6 5.7174 3.3667 1.5700 10 1 5.9043 2.8373 0.6474 11 6 6.7726 3.7518 2.3698 12 7 8.0065 3.4740 2.0093 13 14 6.4494 4.6679 3.9653 14 1 6.2895 3.6917 5.0729 15 1 7.5934 5.5677 4.2599 16 1 5.2084 5.4724 3.8316 17 7 2.9058 3.9645 -0.0235 18 6 2.0729 3.5156 -0.9409 19 7 1.6386 2.2712 -0.9341 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 3.2513 1.1840 1.7547 26 1 4.6922 3.4073 4.0800 27 1 2.9774 3.2653 3.6233 28 1 4.1136 1.9509 3.2365 29 1 8.7487 3.7446 2.5721 30 1 1.7335 4.1867 -1.7160 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261208336.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:46 Heat of formation + Delta-G solvation = 33.522827 kcal Electronic energy + Delta-G solvation = -13112.292992 eV Core-core repulsion = 10907.368161 eV Total energy + Delta-G solvation = -2204.924831 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52542 -35.52385 -34.36767 -32.20232 -30.95459 -29.73614 -25.39934 -24.68758 -23.83429 -22.09999 -19.72195 -17.12410 -16.58726 -15.96638 -14.95523 -14.81181 -14.45946 -13.81656 -13.55707 -13.02514 -12.88436 -12.33695 -12.23762 -11.49049 -11.42205 -11.18460 -11.11064 -10.74789 -10.36318 -10.05014 -9.87642 -9.55661 -9.25026 -8.74612 -8.65456 -8.55154 -6.16797 -4.18531 1.51729 1.71644 3.20864 3.33034 3.35023 4.32102 4.35810 4.42337 4.71991 4.86300 5.16514 5.24774 5.33655 5.52970 5.68926 5.79544 5.88145 5.94606 6.07354 6.20112 6.22921 6.26777 6.46992 6.54785 6.82175 7.05515 7.18344 7.55702 7.70860 8.36326 8.73116 8.83388 9.41533 10.95840 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.048120 B = 0.008787 C = 0.008486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.738763 B = 3185.829476 C = 3298.691769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C 0.162 3.838 4 C -0.222 4.222 5 C 0.231 3.769 6 C 0.048 3.952 7 H 0.053 0.947 8 C -0.148 4.148 9 C -0.509 4.509 10 H 0.073 0.927 11 C 0.075 3.925 12 N -0.894 5.894 13 Si 0.888 3.112 14 H -0.277 1.277 15 H -0.294 1.294 16 H -0.264 1.264 17 N -0.526 5.526 18 C 0.287 3.713 19 N -0.541 5.541 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.267 0.733 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.219 -4.521 -0.488 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C 0.017 3.983 4 C -0.244 4.244 5 C 0.086 3.914 6 C 0.028 3.972 7 H 0.071 0.929 8 C -0.206 4.206 9 C -0.547 4.547 10 H 0.091 0.909 11 C -0.127 4.127 12 N -0.532 5.532 13 Si 0.718 3.282 14 H -0.204 1.204 15 H -0.222 1.222 16 H -0.189 1.189 17 N -0.240 5.240 18 C -0.002 4.002 19 N -0.257 5.257 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.162 0.838 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.338 -3.892 -1.152 12.989 hybrid contribution 0.407 -0.043 1.396 1.455 sum -11.931 -3.935 0.244 12.565 Atomic orbital electron populations 1.21645 0.94218 1.01431 1.02571 1.20473 0.96799 0.90399 1.03301 1.21561 0.91390 0.95867 0.89453 1.22651 1.00959 0.98642 1.02143 1.22114 0.88640 0.89198 0.91459 1.18348 0.93405 0.97227 0.88228 0.92893 1.22233 0.98573 1.01489 0.98293 1.20651 0.86724 1.38475 1.08883 0.90878 1.24932 0.94794 0.95051 0.97951 1.69872 0.98451 1.46437 1.38393 0.86826 0.77650 0.79943 0.83752 1.20367 1.22178 1.18910 1.68302 1.12039 1.39584 1.04109 1.24794 0.90095 0.90136 0.95173 1.68063 1.27304 1.04643 1.25673 0.92462 0.93021 0.91631 0.89890 0.90140 0.83830 0.93308 0.94788 0.92286 0.92342 0.79666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.78 37.16 0.36 -1.20 16 2 C -0.07 -0.91 6.37 -27.88 -0.18 -1.09 16 3 C 0.16 2.75 6.21 -82.24 -0.51 2.24 16 4 C -0.22 -4.19 8.89 -39.32 -0.35 -4.54 16 5 C 0.23 5.03 5.76 -82.25 -0.47 4.56 16 6 C 0.05 1.13 2.24 -92.92 -0.21 0.92 16 7 H 0.05 1.31 7.19 -51.93 -0.37 0.94 16 8 C -0.15 -3.07 8.12 37.16 0.30 -2.77 16 9 C -0.51 -14.22 9.13 -34.44 -0.31 -14.54 16 10 H 0.07 2.26 7.98 -52.49 -0.42 1.84 16 11 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 12 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 13 Si 0.89 21.38 24.37 -169.99 -4.14 17.24 16 14 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.26 -6.11 6.52 56.52 0.37 -5.75 16 17 N -0.53 -11.20 10.38 -10.80 -0.11 -11.31 16 18 C 0.29 5.15 12.29 -92.15 -1.13 4.02 16 19 N -0.54 -9.50 10.04 -10.80 -0.11 -9.61 16 20 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.78 7.98 -51.93 -0.41 0.36 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 25 H 0.14 2.48 6.39 -52.49 -0.34 2.14 16 26 H 0.05 1.05 3.29 -51.93 -0.17 0.88 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.14 6.58 -51.93 -0.34 0.80 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.19 2.61 8.06 -52.49 -0.42 2.18 16 LS Contribution 249.77 15.07 3.76 3.76 Total: -1.00 -30.92 249.77 -6.19 -37.10 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.76 Total: -0.66 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.60 Total: -10.35 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.55 Total: -47.09 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.24 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.92 -6.19 -37.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208336.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.625 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds