Wall clock time and date at job start Mon Mar 30 2020 02:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47168 * 2 1 4 4 C 1.38618 * 120.44772 * 125.00086 * 3 2 1 5 5 C 1.38573 * 118.39629 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.44797 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47551 * 204.99814 * 6 5 4 8 8 C 1.52996 * 109.47211 * 325.00313 * 6 5 4 9 9 C 1.50702 * 109.46869 * 84.99869 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.32349 * 119.10804 * 0.27095 * 5 4 3 18 18 C 1.31783 * 120.81674 * 359.44623 * 17 5 4 19 19 N 1.31810 * 121.75044 * 0.56816 * 18 17 5 20 20 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47600 * 300.00374 * 1 2 3 22 22 H 1.09007 * 109.47333 * 60.00500 * 1 2 3 23 23 H 1.08995 * 109.47084 * 239.99661 * 2 1 3 24 24 H 1.09002 * 109.46868 * 119.99559 * 2 1 3 25 25 H 1.07993 * 120.80309 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.47094 * 179.97438 * 8 6 5 27 27 H 1.09003 * 109.46851 * 299.99806 * 8 6 5 28 28 H 1.09003 * 109.47532 * 59.99881 * 8 6 5 29 29 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 30 30 H 1.07998 * 119.12299 * 180.26335 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8546 0.9789 5 6 3.3471 3.1699 0.9386 6 6 4.3039 3.6904 1.9800 7 1 4.1902 4.7706 2.0704 8 6 3.9999 3.0312 3.3268 9 6 5.7174 3.3667 1.5700 10 1 5.9043 2.8373 0.6474 11 6 6.7726 3.7518 2.3698 12 7 8.0065 3.4740 2.0093 13 14 6.4494 4.6679 3.9653 14 1 6.2895 3.6917 5.0729 15 1 7.5934 5.5677 4.2599 16 1 5.2084 5.4724 3.8316 17 7 2.9058 3.9645 -0.0235 18 6 2.0729 3.5156 -0.9409 19 7 1.6386 2.2712 -0.9341 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 3.2513 1.1840 1.7547 26 1 4.6922 3.4073 4.0800 27 1 2.9774 3.2653 3.6233 28 1 4.1136 1.9509 3.2365 29 1 8.7487 3.7446 2.5721 30 1 1.7335 4.1867 -1.7160 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261208336.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:46 Heat of formation + Delta-G solvation = 13.602344 kcal Electronic energy + Delta-G solvation = -13113.156809 eV Core-core repulsion = 10907.368161 eV Total energy + Delta-G solvation = -2205.788648 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.97866 -37.17416 -35.74114 -34.13439 -32.41112 -31.18879 -27.28718 -26.11031 -25.28515 -23.50823 -21.29585 -18.96327 -18.33438 -17.45484 -16.57393 -16.36502 -15.84809 -15.13834 -14.96534 -14.63868 -14.50828 -14.12397 -13.40206 -13.16346 -12.90688 -12.62326 -12.41542 -12.18174 -11.99321 -11.62713 -11.56282 -11.42195 -10.94514 -10.79076 -10.28374 -10.04756 -8.35053 -6.42220 0.09497 0.21027 1.30536 1.38350 1.48521 2.29735 2.89579 2.98887 3.18528 3.28883 3.56108 4.10465 4.20102 4.32815 4.42408 4.44345 4.58049 4.66579 4.73681 4.85718 4.98044 5.05797 5.11217 5.18731 5.39645 5.44855 5.51438 5.62170 6.16440 6.22946 6.60321 7.21856 7.26602 8.81619 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.048120 B = 0.008787 C = 0.008486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.738763 B = 3185.829476 C = 3298.691769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 C 0.167 3.833 4 C -0.230 4.230 5 C 0.200 3.800 6 C 0.048 3.952 7 H 0.038 0.962 8 C -0.143 4.143 9 C -0.513 4.513 10 H 0.023 0.977 11 C 0.019 3.981 12 N -0.944 5.944 13 Si 0.953 3.047 14 H -0.254 1.254 15 H -0.297 1.297 16 H -0.250 1.250 17 N -0.558 5.558 18 C 0.283 3.717 19 N -0.539 5.539 20 H 0.084 0.916 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.158 0.842 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.270 0.730 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.322 -5.279 0.532 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C 0.021 3.979 4 C -0.251 4.251 5 C 0.056 3.944 6 C 0.029 3.971 7 H 0.056 0.944 8 C -0.200 4.200 9 C -0.551 4.551 10 H 0.042 0.958 11 C -0.179 4.179 12 N -0.584 5.584 13 Si 0.779 3.221 14 H -0.179 1.179 15 H -0.224 1.224 16 H -0.174 1.174 17 N -0.273 5.273 18 C -0.005 4.005 19 N -0.255 5.255 20 H 0.103 0.897 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.175 0.825 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.465 -4.657 -0.135 15.197 hybrid contribution 1.026 0.132 0.908 1.376 sum -13.440 -4.524 0.773 14.202 Atomic orbital electron populations 1.21615 0.92717 1.03049 1.01905 1.20665 0.97957 0.87567 1.04782 1.22276 0.89906 0.97620 0.88061 1.22810 1.01388 0.97625 1.03293 1.21967 0.89708 0.90762 0.91928 1.18202 0.91413 0.96741 0.90768 0.94392 1.22127 1.00204 1.01829 0.95883 1.20811 0.89675 1.37624 1.07025 0.95826 1.25837 0.94237 0.95924 1.01906 1.70024 0.99693 1.48324 1.40315 0.85781 0.77829 0.79026 0.79454 1.17906 1.22446 1.17353 1.68247 1.13484 1.40606 1.05006 1.25473 0.89040 0.90964 0.94973 1.68215 1.27066 1.04539 1.25676 0.89742 0.93333 0.92639 0.88840 0.88187 0.82469 0.93904 0.91714 0.91231 0.92130 0.76347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.78 71.98 0.70 -1.84 16 2 C -0.07 -1.60 6.37 29.85 0.19 -1.41 16 3 C 0.17 5.33 6.21 42.58 0.26 5.59 16 4 C -0.23 -8.39 8.89 22.44 0.20 -8.19 16 5 C 0.20 8.71 5.76 42.56 0.25 8.96 16 6 C 0.05 2.29 2.24 -12.29 -0.03 2.26 16 7 H 0.04 1.88 7.19 -2.39 -0.02 1.87 16 8 C -0.14 -5.62 8.12 71.98 0.58 -5.03 16 9 C -0.51 -29.52 9.13 25.60 0.23 -29.29 16 10 H 0.02 1.54 7.98 -2.91 -0.02 1.51 16 11 C 0.02 1.09 5.45 84.66 0.46 1.55 16 12 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 13 Si 0.95 43.83 24.37 68.60 1.67 45.50 16 14 H -0.25 -10.68 6.87 99.48 0.68 -10.00 16 15 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 16 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 17 N -0.56 -23.73 10.38 -188.08 -1.95 -25.68 16 18 C 0.28 9.88 12.29 180.88 2.22 12.10 16 19 N -0.54 -17.99 10.04 -188.07 -1.89 -19.88 16 20 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.05 1.16 7.98 -2.38 -0.02 1.14 16 23 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.10 1.86 7.94 -2.39 -0.02 1.84 16 25 H 0.16 5.15 6.39 -2.91 -0.02 5.13 16 26 H 0.04 1.72 3.29 -2.39 -0.01 1.71 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.54 6.58 -2.39 -0.02 2.53 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.22 5.76 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -68.68 249.77 4.26 -64.43 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.05 Total: 9.25 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.08 Total: -15.29 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -3.54 Total: -103.89 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.67 Total: 45.50 kcal Total: -68.68 4.26 -64.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208336.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.029 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds