Wall clock time and date at job start Mon Mar 30 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47348 * 2 1 4 4 N 1.39880 * 125.67650 * 89.97214 * 3 2 1 5 5 C 1.30318 * 109.23016 * 180.02562 * 4 3 2 6 6 C 1.41878 * 108.05043 * 0.02562 * 5 4 3 7 7 C 1.41600 * 126.55903 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99913 * 215.83177 * 7 6 5 9 9 C 1.39696 * 119.99921 * 35.83405 * 7 6 5 10 10 N 1.31032 * 119.99706 * 16.37734 * 9 7 6 11 11 Si 1.86797 * 120.00071 * 196.37782 * 9 7 6 12 12 H 1.48506 * 109.46997 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47106 * 119.99890 * 11 9 7 14 14 H 1.48504 * 109.47132 * 239.99894 * 11 9 7 15 15 C 1.34502 * 125.67712 * 270.25744 * 3 2 1 16 16 C 1.50700 * 126.40675 * 359.97438 * 15 3 2 17 17 C 1.53006 * 117.50087 * 196.20612 * 16 15 3 18 18 C 1.53001 * 117.49891 * 127.54316 * 16 15 3 19 19 H 1.09002 * 109.46807 * 299.99614 * 1 2 3 20 20 H 1.08996 * 109.47587 * 60.00115 * 1 2 3 21 21 H 1.09005 * 109.47329 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46998 * 239.99626 * 2 1 3 23 23 H 1.08998 * 109.47118 * 120.00487 * 2 1 3 24 24 H 1.08003 * 125.97249 * 179.97438 * 5 4 3 25 25 H 0.96993 * 120.00043 * 4.28773 * 10 9 7 26 26 H 1.08999 * 115.54928 * 341.86951 * 16 15 3 27 27 H 1.08995 * 117.49484 * 359.97438 * 17 16 15 28 28 H 1.08996 * 117.49819 * 145.02293 * 17 16 15 29 29 H 1.09001 * 117.49741 * 214.97964 * 18 16 15 30 30 H 1.08995 * 117.50032 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2898 2.1505 1.1363 5 6 2.7061 3.3289 0.7673 6 6 2.7191 3.3665 -0.6509 7 6 3.1051 4.4610 -1.4622 8 1 2.5913 4.6509 -2.3930 9 6 4.1505 5.2950 -1.0586 10 7 4.9774 4.9023 -0.1211 11 14 4.3697 6.9702 -1.8555 12 1 3.3130 7.1735 -2.8790 13 1 4.2659 8.0288 -0.8191 14 1 5.7046 7.0399 -2.5023 15 6 2.2752 2.1223 -1.0926 16 6 2.1151 1.6872 -2.5265 17 6 2.8086 2.5269 -3.6012 18 6 1.2865 2.5840 -3.4485 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.9907 4.1362 1.4260 25 1 4.9020 4.0088 0.2489 26 1 2.0587 0.6107 -2.6876 27 1 3.3802 3.3943 -3.2711 28 1 3.2079 2.0028 -4.4695 29 1 0.6852 2.0973 -4.2165 30 1 0.8568 3.4884 -3.0179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261222945.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:40 Heat of formation + Delta-G solvation = 85.802603 kcal Electronic energy + Delta-G solvation = -13512.080952 eV Core-core repulsion = 11309.423142 eV Total energy + Delta-G solvation = -2202.657810 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.75228 -36.10125 -34.22604 -32.68497 -28.87609 -28.31068 -24.97229 -22.81093 -21.93928 -21.51125 -19.60579 -18.41444 -17.32144 -15.77246 -14.43066 -13.98232 -13.84224 -13.76679 -13.25550 -12.77763 -12.51699 -11.98337 -11.70405 -11.58114 -10.94220 -10.91578 -10.67726 -10.34937 -10.22501 -9.94295 -9.93411 -9.51465 -8.87699 -8.73700 -7.87597 -7.03475 -6.66103 -3.97279 3.04048 3.33990 3.36408 3.51244 3.68793 4.19653 4.33410 4.81933 5.16778 5.35261 5.44877 5.51355 5.63342 5.69869 5.86575 5.88819 6.01030 6.05677 6.29767 6.39353 6.44534 6.56389 6.81390 7.17424 7.25811 7.52456 7.79946 8.20054 8.32282 8.49083 8.97079 9.13686 9.37547 10.62193 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.036883 B = 0.012097 C = 0.009785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.968948 B = 2313.980361 C = 2860.963101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.380 5.380 4 N -0.322 5.322 5 C 0.004 3.996 6 C -0.016 4.016 7 C -0.528 4.528 8 H 0.073 0.927 9 C 0.033 3.967 10 N -0.854 5.854 11 Si 1.069 2.931 12 H -0.282 1.282 13 H -0.281 1.281 14 H -0.285 1.285 15 C -0.037 4.037 16 C -0.059 4.059 17 C -0.181 4.181 18 C -0.181 4.181 19 H 0.059 0.941 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.163 0.837 25 H 0.286 0.714 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 -5.310 -4.054 8.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.169 5.169 4 N -0.144 5.144 5 C -0.182 4.182 6 C -0.025 4.025 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.181 4.181 10 N -0.483 5.483 11 Si 0.896 3.104 12 H -0.208 1.208 13 H -0.207 1.207 14 H -0.211 1.211 15 C -0.159 4.159 16 C -0.079 4.079 17 C -0.219 4.219 18 C -0.219 4.219 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.180 0.820 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.155 0.845 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.484 -4.790 -3.001 7.215 hybrid contribution -0.810 -1.039 -0.639 1.464 sum -5.294 -5.829 -3.640 8.674 Atomic orbital electron populations 1.22180 0.95937 1.01440 1.02878 1.21171 0.94061 0.80536 1.02306 1.47400 1.55445 1.10642 1.03397 1.76507 1.23477 1.05636 1.08787 1.23911 1.02932 0.94819 0.96584 1.17899 1.01335 0.92238 0.91075 1.19593 1.18310 1.10550 1.07768 0.90916 1.26517 0.92176 1.03950 0.95497 1.70478 1.33120 1.21758 1.22941 0.83570 0.76245 0.74510 0.76096 1.20754 1.20738 1.21087 1.20219 1.16517 0.92333 0.86815 1.19744 1.05848 0.94954 0.87389 1.23454 0.95077 1.05027 0.98293 1.22885 0.94451 1.02498 1.02025 0.92218 0.92240 0.91925 0.90676 0.90469 0.82030 0.90119 0.89556 0.84476 0.90570 0.90299 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.14 2.42 6.93 -4.05 -0.03 2.39 16 3 N -0.38 -8.60 3.58 -56.23 -0.20 -8.80 16 4 N -0.32 -8.04 12.47 30.97 0.39 -7.65 16 5 C 0.00 0.09 10.05 -16.80 -0.17 -0.07 16 6 C -0.02 -0.41 5.20 -106.83 -0.56 -0.97 16 7 C -0.53 -14.00 6.84 -37.76 -0.26 -14.26 16 8 H 0.07 1.88 5.46 -52.49 -0.29 1.60 16 9 C 0.03 0.86 5.34 -17.35 -0.09 0.77 16 10 N -0.85 -24.04 13.13 55.54 0.73 -23.31 16 11 Si 1.07 23.07 29.96 -169.99 -5.09 17.98 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 C -0.04 -0.89 6.71 -81.03 -0.54 -1.43 16 16 C -0.06 -1.19 5.94 -91.77 -0.55 -1.74 16 17 C -0.18 -3.55 9.57 -26.69 -0.26 -3.80 16 18 C -0.18 -3.34 9.77 -26.69 -0.26 -3.60 16 19 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 1.14 7.14 -51.93 -0.37 0.77 16 23 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.16 4.20 7.83 -52.48 -0.41 3.79 16 25 H 0.29 8.31 6.48 -40.82 -0.26 8.04 16 26 H 0.09 1.54 7.24 -51.93 -0.38 1.16 16 27 H 0.14 3.10 4.74 -51.93 -0.25 2.86 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.93 7.56 -51.93 -0.39 1.53 16 LS Contribution 252.36 15.07 3.80 3.80 Total: -1.00 -29.48 252.36 -6.38 -35.87 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.68 Total: 6.89 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.33 Total: -24.78 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.91 Total: -39.76 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.09 Total: 17.98 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.48 -6.38 -35.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222945.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.668 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds