Wall clock time and date at job start Mon Mar 30 2020 02:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.03991 * 2 1 4 4 C 1.35316 * 107.74613 * 179.75096 * 3 2 1 5 5 C 1.50706 * 126.04256 * 180.27593 * 4 3 2 6 6 H 1.09003 * 109.46825 * 0.16325 * 5 4 3 7 7 C 1.50702 * 109.47060 * 120.16434 * 5 4 3 8 8 H 1.07997 * 120.00025 * 359.97438 * 7 5 4 9 9 C 1.37877 * 119.99622 * 180.02562 * 7 5 4 10 10 N 1.31519 * 120.00013 * 359.97438 * 9 7 5 11 11 Si 1.86794 * 120.00082 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46942 * 89.99810 * 11 9 7 13 13 H 1.48503 * 109.47466 * 210.00327 * 11 9 7 14 14 H 1.48508 * 109.47192 * 330.00335 * 11 9 7 15 15 C 1.52994 * 109.46830 * 240.16509 * 5 4 3 16 16 C 1.53006 * 117.50013 * 128.74754 * 15 5 4 17 17 C 1.52995 * 117.50365 * 60.08736 * 15 5 4 18 18 C 1.39870 * 107.92161 * 0.39436 * 4 3 2 19 19 N 1.30836 * 108.20019 * 359.59732 * 18 4 3 20 20 H 1.09003 * 109.47146 * 270.02687 * 1 2 3 21 21 H 1.09004 * 109.46833 * 30.02496 * 1 2 3 22 22 H 1.09002 * 109.47194 * 150.02455 * 1 2 3 23 23 H 1.08002 * 126.12737 * 359.97438 * 3 2 1 24 24 H 0.97004 * 120.00012 * 179.97438 * 10 9 7 25 25 H 1.08997 * 115.55073 * 274.40989 * 15 5 4 26 26 H 1.09001 * 117.49415 * 359.97438 * 16 15 5 27 27 H 1.08999 * 117.49953 * 145.01653 * 16 15 5 28 28 H 1.08998 * 117.50385 * 214.97779 * 17 15 5 29 29 H 1.09005 * 117.49579 * 359.97438 * 17 15 5 30 30 H 1.08002 * 125.90382 * 179.86983 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5451 0.0135 6 1 4.4641 2.5918 0.0170 7 6 5.5863 1.2554 1.2455 8 1 5.2528 0.5100 1.9523 9 6 6.7600 1.9429 1.4708 10 7 7.1658 2.8510 0.6104 11 14 7.7739 1.5845 2.9982 12 1 8.7523 0.5075 2.7013 13 1 8.4996 2.8128 3.4102 14 1 6.8757 1.1479 4.0974 15 6 5.6071 1.2618 -1.2341 16 6 6.0291 2.4590 -2.0884 17 6 4.9506 1.4985 -2.5957 18 6 3.5347 -0.7322 0.0000 19 7 2.2891 -1.1328 0.0001 20 1 -0.3633 0.0005 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.9282 2.1193 -0.0004 24 1 7.9914 3.3349 0.7691 25 1 6.3078 0.4311 -1.1509 26 1 5.7086 3.4483 -1.7618 27 1 7.0072 2.4156 -2.5675 28 1 5.2196 0.8236 -3.4083 29 1 3.9207 1.8555 -2.6026 30 1 4.4054 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227894.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:16 Heat of formation + Delta-G solvation = 99.286508 kcal Electronic energy + Delta-G solvation = -13275.819502 eV Core-core repulsion = 11073.746398 eV Total energy + Delta-G solvation = -2202.073104 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36359 -36.41955 -32.89041 -32.30941 -30.20047 -27.70640 -25.45233 -23.00208 -21.13105 -20.48048 -19.90064 -18.63182 -16.38268 -15.88330 -14.79698 -14.47362 -14.05224 -13.66788 -12.98648 -12.81357 -12.40128 -12.08489 -11.89753 -11.63200 -10.89811 -10.72661 -10.41601 -10.27539 -9.81863 -9.74501 -9.55717 -8.68711 -8.64254 -8.59035 -8.20199 -7.34663 -5.90135 -3.95868 2.63321 3.19412 3.35342 3.42351 3.46177 3.80188 4.52030 4.99169 5.23340 5.39063 5.39122 5.55946 5.61579 5.85383 6.07978 6.26832 6.43598 6.56006 6.61704 6.65508 6.96117 7.09451 7.24534 7.36541 7.52686 7.62560 7.80828 7.90063 8.05668 8.45063 8.55760 9.06943 9.67854 11.15346 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.031931 B = 0.011130 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.668827 B = 2515.122525 C = 3086.524843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.395 5.395 3 C 0.017 3.983 4 C -0.165 4.165 5 C 0.140 3.860 6 H 0.031 0.969 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.066 3.934 10 N -0.877 5.877 11 Si 0.886 3.114 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.076 4.076 16 C -0.139 4.139 17 C -0.225 4.225 18 C 0.060 3.940 19 N -0.320 5.320 20 H 0.063 0.937 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.161 0.839 24 H 0.257 0.743 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.210 -1.887 -2.881 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.180 5.180 3 C -0.126 4.126 4 C -0.176 4.176 5 C 0.120 3.880 6 H 0.049 0.951 7 C -0.547 4.547 8 H 0.074 0.926 9 C -0.137 4.137 10 N -0.515 5.515 11 Si 0.714 3.286 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.095 4.095 16 C -0.176 4.176 17 C -0.262 4.262 18 C -0.126 4.126 19 N -0.143 5.143 20 H 0.082 0.918 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.178 0.822 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.013 -2.736 -2.912 9.859 hybrid contribution 1.204 0.633 0.838 1.597 sum -7.809 -2.103 -2.074 8.349 Atomic orbital electron populations 1.21595 0.75872 1.03350 1.02277 1.48200 1.05579 1.04161 1.60022 1.22214 0.91334 0.92499 1.06554 1.20718 0.94961 0.94176 1.07744 1.16838 0.86495 0.92592 0.92066 0.95123 1.21048 1.06083 1.21656 1.05883 0.92640 1.24953 0.97474 0.95133 0.96106 1.70030 1.22347 1.24093 1.34987 0.86701 0.80437 0.77570 0.83893 1.20831 1.21454 1.20096 1.22176 0.99599 0.98271 0.89438 1.22439 0.96102 0.95742 1.03346 1.23007 0.97496 1.05616 1.00058 1.23693 0.94095 0.95627 0.99169 1.77148 1.02185 1.08499 1.26429 0.91846 0.90372 0.90259 0.82159 0.93301 0.90120 0.89758 0.91362 0.91396 0.90782 0.80726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.33 11.47 59.85 0.69 2.01 16 2 N -0.39 -7.00 4.01 -68.16 -0.27 -7.27 16 3 C 0.02 0.32 11.38 -17.23 -0.20 0.12 16 4 C -0.17 -3.59 4.39 -105.05 -0.46 -4.05 16 5 C 0.14 3.39 2.29 -92.92 -0.21 3.18 16 6 H 0.03 0.80 7.87 -51.93 -0.41 0.40 16 7 C -0.51 -13.62 8.39 -34.44 -0.29 -13.91 16 8 H 0.06 1.51 7.73 -52.49 -0.41 1.11 16 9 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 10 N -0.88 -24.13 11.43 55.43 0.63 -23.49 16 11 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C -0.08 -1.76 4.09 -90.62 -0.37 -2.13 16 16 C -0.14 -3.06 9.04 -26.69 -0.24 -3.30 16 17 C -0.22 -4.54 9.87 -26.70 -0.26 -4.81 16 18 C 0.06 1.26 11.62 -17.37 -0.20 1.05 16 19 N -0.32 -6.46 12.58 30.62 0.39 -6.07 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.16 2.61 8.06 -52.49 -0.42 2.18 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.08 1.96 8.11 -51.93 -0.42 1.54 16 26 H 0.08 1.94 8.05 -51.93 -0.42 1.52 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.18 3.44 8.06 -52.49 -0.42 3.02 16 LS Contribution 261.76 15.07 3.94 3.94 Total: -1.00 -29.55 261.76 -6.15 -35.70 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.17 Total: 1.25 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -1.64 Total: -20.15 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.75 Total: -36.84 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.55 -6.15 -35.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227894.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.984 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds