Wall clock time and date at job start Mon Mar 30 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30321 * 125.97779 * 2 1 4 4 N 1.39878 * 109.23086 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.67610 * 179.97438 * 4 3 2 6 6 C 1.53786 * 113.61643 * 165.88433 * 5 4 3 7 7 C 1.53962 * 87.01719 * 89.22773 * 6 5 4 8 8 C 1.53781 * 113.61305 * 263.49280 * 5 4 3 9 9 C 1.34505 * 108.64626 * 0.24174 * 4 3 2 10 10 C 1.39281 * 107.18972 * 359.61649 * 9 4 3 11 11 C 1.41595 * 126.55608 * 180.13925 * 10 9 4 12 12 H 1.07998 * 119.99892 * 180.28203 * 11 10 9 13 13 C 1.39692 * 120.00320 * 0.28317 * 11 10 9 14 14 N 1.31025 * 119.99856 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00228 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46891 * 90.00299 * 15 13 11 17 17 H 1.48493 * 109.47492 * 210.00171 * 15 13 11 18 18 H 1.48496 * 109.47220 * 330.00753 * 15 13 11 19 19 H 1.09002 * 109.47192 * 90.02448 * 1 2 3 20 20 H 1.08997 * 109.47253 * 210.02323 * 1 2 3 21 21 H 1.09005 * 109.46636 * 330.02704 * 1 2 3 22 22 H 1.09002 * 112.84935 * 34.68761 * 5 4 3 23 23 H 1.08993 * 113.61491 * 203.74894 * 6 5 4 24 24 H 1.09000 * 113.61138 * 334.65232 * 6 5 4 25 25 H 1.08997 * 113.53543 * 270.80998 * 7 6 5 26 26 H 1.08998 * 113.73879 * 139.94595 * 7 6 5 27 27 H 1.09001 * 113.61695 * 25.34675 * 8 5 4 28 28 H 1.08997 * 113.61223 * 156.25258 * 8 5 4 29 29 H 1.08007 * 126.40558 * 179.72609 * 9 4 3 30 30 H 0.97003 * 120.00113 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0546 0.0000 4 7 3.6121 0.6516 0.0006 5 6 4.7731 1.5449 0.0002 6 6 6.0946 0.8379 0.3447 7 6 6.2446 0.5586 -1.1619 8 6 5.3590 1.7931 -1.3998 9 6 3.6567 -0.6927 -0.0044 10 6 2.3404 -1.1483 0.0007 11 6 1.9155 -2.4989 0.0008 12 1 0.8612 -2.7333 0.0005 13 6 2.8598 -3.5283 0.0014 14 7 4.1388 -3.2440 0.0014 15 14 2.2991 -5.3102 0.0023 16 1 2.1507 -5.7831 -1.3975 17 1 3.3069 -6.1460 0.7029 18 1 0.9938 -5.4181 0.7022 19 1 -0.3634 -0.0004 -1.0277 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3633 0.8903 0.5135 22 1 4.6047 2.4580 0.5712 23 1 6.8571 1.5073 0.7427 24 1 5.9645 -0.0621 0.9457 25 1 5.7840 -0.3770 -1.4791 26 1 7.2638 0.6748 -1.5304 27 1 4.6360 1.6631 -2.2050 28 1 5.9201 2.7241 -1.4795 29 1 4.5467 -1.3046 -0.0095 30 1 4.7946 -3.9588 0.0022 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232173.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:41 Heat of formation + Delta-G solvation = 84.163929 kcal Electronic energy + Delta-G solvation = -13428.134511 eV Core-core repulsion = 11225.405643 eV Total energy + Delta-G solvation = -2202.728868 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77771 -37.50033 -33.27295 -31.30730 -28.58860 -27.12356 -25.67197 -25.04394 -23.37040 -20.01853 -18.77730 -17.82472 -16.83618 -15.43358 -15.05127 -14.55476 -13.56308 -13.47118 -12.73965 -12.41181 -12.21916 -11.99440 -11.79246 -11.34936 -11.22166 -11.02714 -10.71556 -10.50320 -10.36927 -10.04464 -9.94530 -9.58513 -9.14852 -8.78298 -7.61369 -6.98282 -6.33136 -3.90600 3.15159 3.24396 3.28687 3.47172 3.81520 4.23299 4.32711 4.91116 5.06140 5.27828 5.37126 5.63913 5.87259 5.90666 6.09070 6.21389 6.27285 6.33282 6.42692 6.47904 6.57110 6.69776 6.77189 7.08451 7.39957 7.66856 7.92994 8.03053 8.51203 8.93551 9.18515 9.25975 9.53499 10.68272 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.012134 C = 0.009154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.728955 B = 2307.012284 C = 3057.891288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.008 3.992 3 N -0.338 5.338 4 N -0.374 5.374 5 C 0.155 3.845 6 C -0.147 4.147 7 C -0.139 4.139 8 C -0.156 4.156 9 C -0.047 4.047 10 C -0.048 4.048 11 C -0.421 4.421 12 H 0.069 0.931 13 C 0.054 3.946 14 N -0.850 5.850 15 Si 0.912 3.088 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.269 1.269 19 H 0.055 0.945 20 H 0.067 0.933 21 H 0.049 0.951 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.195 0.805 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 4.299 -0.656 5.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.157 4.157 3 N -0.162 5.162 4 N -0.162 5.162 5 C 0.050 3.950 6 C -0.186 4.186 7 C -0.176 4.176 8 C -0.195 4.195 9 C -0.188 4.188 10 C -0.057 4.057 11 C -0.456 4.456 12 H 0.087 0.913 13 C -0.153 4.153 14 N -0.483 5.483 15 Si 0.739 3.261 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.193 1.193 19 H 0.074 0.926 20 H 0.086 0.914 21 H 0.068 0.932 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.211 0.789 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.383 5.443 -0.641 6.441 hybrid contribution -0.065 -1.764 -0.050 1.766 sum 3.318 3.679 -0.691 5.003 Atomic orbital electron populations 1.19819 0.88978 1.01124 1.00838 1.22286 0.95341 0.91980 1.06142 1.76289 0.87438 1.24419 1.28079 1.47347 1.02431 1.05019 1.61371 1.21498 0.83695 0.92840 0.96958 1.23281 0.95732 1.01670 0.97867 1.22941 0.99382 0.99374 0.95903 1.23384 0.99413 0.98375 0.98283 1.23919 1.01211 0.81188 1.12494 1.18009 0.89818 0.92832 1.05088 1.18742 0.93430 0.89048 1.44424 0.91322 1.25508 0.94554 1.00471 0.94775 1.69437 1.01115 1.33184 1.44565 0.86242 0.78872 0.82505 0.78491 1.20255 1.20887 1.19301 0.92619 0.91447 0.93162 0.89685 0.89349 0.89835 0.88906 0.91923 0.91180 0.89768 0.78882 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 10.24 36.01 0.37 -0.64 16 2 C 0.01 0.21 7.28 -81.84 -0.60 -0.38 16 3 N -0.34 -8.63 12.47 34.00 0.42 -8.21 16 4 N -0.37 -9.04 3.77 -53.12 -0.20 -9.24 16 5 C 0.16 2.93 5.16 -67.12 -0.35 2.59 16 6 C -0.15 -2.40 7.34 -25.82 -0.19 -2.59 16 7 C -0.14 -2.27 7.65 -25.82 -0.20 -2.46 16 8 C -0.16 -2.55 7.88 -25.92 -0.20 -2.75 16 9 C -0.05 -1.24 8.56 -15.99 -0.14 -1.37 16 10 C -0.05 -1.34 5.94 -106.83 -0.63 -1.98 16 11 C -0.42 -11.70 9.15 -37.76 -0.35 -12.05 16 12 H 0.07 1.82 7.37 -52.49 -0.39 1.43 16 13 C 0.05 1.44 5.49 -17.35 -0.10 1.35 16 14 N -0.85 -22.74 10.33 55.54 0.57 -22.17 16 15 Si 0.91 20.14 29.56 -169.99 -5.02 15.12 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 20 H 0.07 1.34 7.61 -51.93 -0.40 0.94 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 23 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.08 1.55 7.04 -51.93 -0.37 1.18 16 25 H 0.09 1.80 6.83 -51.93 -0.35 1.45 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.20 5.17 4.27 -52.48 -0.22 4.95 16 30 H 0.27 6.67 8.30 -40.82 -0.34 6.34 16 LS Contribution 250.55 15.07 3.78 3.78 Total: -1.00 -30.01 250.55 -6.65 -36.66 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.82 Total: 4.35 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.38 Total: -20.29 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.80 Total: -39.62 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.01 -6.65 -36.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232173.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.826 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds