Wall clock time and date at job start Mon Mar 30 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30321 * 125.97779 * 2 1 4 4 N 1.39878 * 109.23086 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.67610 * 179.97438 * 4 3 2 6 6 C 1.53786 * 113.61643 * 165.88433 * 5 4 3 7 7 C 1.53962 * 87.01719 * 89.22773 * 6 5 4 8 8 C 1.53781 * 113.61305 * 263.49280 * 5 4 3 9 9 C 1.34505 * 108.64626 * 0.24174 * 4 3 2 10 10 C 1.39281 * 107.18972 * 359.61649 * 9 4 3 11 11 C 1.41595 * 126.55608 * 180.13925 * 10 9 4 12 12 H 1.07998 * 119.99892 * 180.28203 * 11 10 9 13 13 C 1.39692 * 120.00320 * 0.28317 * 11 10 9 14 14 N 1.31025 * 119.99856 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00228 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46891 * 90.00299 * 15 13 11 17 17 H 1.48493 * 109.47492 * 210.00171 * 15 13 11 18 18 H 1.48496 * 109.47220 * 330.00753 * 15 13 11 19 19 H 1.09002 * 109.47192 * 90.02448 * 1 2 3 20 20 H 1.08997 * 109.47253 * 210.02323 * 1 2 3 21 21 H 1.09005 * 109.46636 * 330.02704 * 1 2 3 22 22 H 1.09002 * 112.84935 * 34.68761 * 5 4 3 23 23 H 1.08993 * 113.61491 * 203.74894 * 6 5 4 24 24 H 1.09000 * 113.61138 * 334.65232 * 6 5 4 25 25 H 1.08997 * 113.53543 * 270.80998 * 7 6 5 26 26 H 1.08998 * 113.73879 * 139.94595 * 7 6 5 27 27 H 1.09001 * 113.61695 * 25.34675 * 8 5 4 28 28 H 1.08997 * 113.61223 * 156.25258 * 8 5 4 29 29 H 1.08007 * 126.40558 * 179.72609 * 9 4 3 30 30 H 0.97003 * 120.00113 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0546 0.0000 4 7 3.6121 0.6516 0.0006 5 6 4.7731 1.5449 0.0002 6 6 6.0946 0.8379 0.3447 7 6 6.2446 0.5586 -1.1619 8 6 5.3590 1.7931 -1.3998 9 6 3.6567 -0.6927 -0.0044 10 6 2.3404 -1.1483 0.0007 11 6 1.9155 -2.4989 0.0008 12 1 0.8612 -2.7333 0.0005 13 6 2.8598 -3.5283 0.0014 14 7 4.1388 -3.2440 0.0014 15 14 2.2991 -5.3102 0.0023 16 1 2.1507 -5.7831 -1.3975 17 1 3.3069 -6.1460 0.7029 18 1 0.9938 -5.4181 0.7022 19 1 -0.3634 -0.0004 -1.0277 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3633 0.8903 0.5135 22 1 4.6047 2.4580 0.5712 23 1 6.8571 1.5073 0.7427 24 1 5.9645 -0.0621 0.9457 25 1 5.7840 -0.3770 -1.4791 26 1 7.2638 0.6748 -1.5304 27 1 4.6360 1.6631 -2.2050 28 1 5.9201 2.7241 -1.4795 29 1 4.5467 -1.3046 -0.0095 30 1 4.7946 -3.9588 0.0022 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232173.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:41 Heat of formation + Delta-G solvation = 66.262648 kcal Electronic energy + Delta-G solvation = -13428.910769 eV Core-core repulsion = 11225.405643 eV Total energy + Delta-G solvation = -2203.505126 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.55768 -39.06372 -35.27122 -33.09197 -30.59550 -28.79446 -27.43604 -26.49220 -25.04850 -21.83513 -20.51269 -19.65243 -18.71049 -17.21475 -16.46557 -16.30985 -15.25542 -15.17834 -14.55791 -14.19485 -13.79464 -13.54357 -13.29801 -13.22128 -12.94468 -12.66170 -12.54339 -12.13402 -11.91352 -11.59217 -11.46541 -11.32487 -11.07875 -10.73951 -9.49300 -9.01513 -8.31335 -5.96837 1.39721 1.44475 1.54573 1.57015 2.12558 2.33791 2.38676 3.49804 3.55306 3.69906 3.91077 4.03264 4.31809 4.57824 4.63266 4.73966 4.80650 4.94336 4.95540 5.00428 5.07303 5.11437 5.12315 5.39936 5.49282 5.71054 5.93068 6.08132 6.52566 6.98174 7.17297 7.21560 7.55350 8.70772 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.012134 C = 0.009154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.728955 B = 2307.012284 C = 3057.891288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.010 4.010 3 N -0.350 5.350 4 N -0.374 5.374 5 C 0.124 3.876 6 C -0.133 4.133 7 C -0.137 4.137 8 C -0.139 4.139 9 C -0.052 4.052 10 C -0.093 4.093 11 C -0.455 4.455 12 H 0.070 0.930 13 C 0.009 3.991 14 N -0.873 5.873 15 Si 0.984 3.016 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.263 1.263 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.101 0.899 23 H 0.135 0.865 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.043 0.957 28 H 0.130 0.870 29 H 0.188 0.812 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 4.732 -0.691 6.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.175 4.175 3 N -0.175 5.175 4 N -0.161 5.161 5 C 0.021 3.979 6 C -0.171 4.171 7 C -0.174 4.174 8 C -0.178 4.178 9 C -0.195 4.195 10 C -0.102 4.102 11 C -0.490 4.490 12 H 0.088 0.912 13 C -0.196 4.196 14 N -0.506 5.506 15 Si 0.808 3.192 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.187 1.187 19 H 0.088 0.912 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.119 0.881 23 H 0.153 0.847 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.148 0.852 29 H 0.204 0.796 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.102 5.911 -0.678 7.227 hybrid contribution -0.206 -1.804 -0.040 1.817 sum 3.896 4.107 -0.718 5.706 Atomic orbital electron populations 1.19894 0.86042 1.02243 1.02096 1.22924 0.97489 0.91169 1.05922 1.76202 0.88272 1.24695 1.28350 1.47745 1.03266 1.04974 1.60154 1.22144 0.83152 0.93072 0.99567 1.23320 0.95256 1.01037 0.97465 1.22846 1.00979 0.97524 0.96089 1.23376 0.98717 1.00332 0.95347 1.23855 1.00790 0.82485 1.12386 1.18530 0.91098 0.93985 1.06596 1.19015 0.93926 0.89818 1.46198 0.91181 1.26391 0.94542 1.04720 0.93913 1.69523 1.02002 1.34626 1.44482 0.85138 0.78607 0.76834 0.78644 1.19674 1.20070 1.18713 0.91187 0.91150 0.91129 0.88095 0.84738 0.92746 0.93075 0.88353 0.93810 0.85227 0.79557 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.80 10.24 71.24 0.73 -1.07 16 2 C -0.01 -0.50 7.28 43.69 0.32 -0.18 16 3 N -0.35 -18.04 12.47 -46.35 -0.58 -18.62 16 4 N -0.37 -18.30 3.77 -321.98 -1.21 -19.51 16 5 C 0.12 4.53 5.16 45.52 0.23 4.77 16 6 C -0.13 -4.09 7.34 31.18 0.23 -3.87 16 7 C -0.14 -4.28 7.65 31.18 0.24 -4.04 16 8 C -0.14 -4.27 7.88 31.12 0.25 -4.03 16 9 C -0.05 -2.86 8.56 84.53 0.72 -2.14 16 10 C -0.09 -5.32 5.94 -21.30 -0.13 -5.45 16 11 C -0.45 -25.86 9.15 23.45 0.21 -25.65 16 12 H 0.07 3.79 7.37 -2.91 -0.02 3.77 16 13 C 0.01 0.51 5.49 85.16 0.47 0.98 16 14 N -0.87 -47.71 10.33 21.79 0.23 -47.48 16 15 Si 0.98 41.46 29.56 68.60 2.03 43.49 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 17 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 19 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 20 H 0.07 2.79 7.61 -2.39 -0.02 2.77 16 21 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 22 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 23 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 24 H 0.05 2.01 7.04 -2.39 -0.02 2.00 16 25 H 0.05 2.03 6.83 -2.39 -0.02 2.01 16 26 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 28 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.19 10.42 4.27 -2.91 -0.01 10.41 16 30 H 0.27 13.80 8.30 -92.71 -0.77 13.03 16 Total: -1.00 -66.53 250.55 4.87 -61.66 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 1.13 Total: 21.14 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 3.27 Total: -40.68 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.57 Total: -85.61 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -66.53 4.87 -61.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232173.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.922 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds