Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35313 * 126.12750 * 2 1 4 4 C 1.50701 * 126.04068 * 0.02562 * 3 2 1 5 5 C 1.50700 * 109.47142 * 85.28164 * 4 3 2 6 6 H 1.07996 * 120.00005 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00016 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99899 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99804 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46942 * 90.00324 * 9 7 5 11 11 H 1.48494 * 109.46953 * 209.99745 * 9 7 5 12 12 H 1.48494 * 109.47496 * 330.00417 * 9 7 5 13 13 C 1.39873 * 107.92250 * 180.26341 * 3 2 1 14 14 N 1.30835 * 108.20137 * 359.74311 * 13 3 2 15 15 N 1.34950 * 126.12713 * 179.81558 * 2 1 3 16 16 C 1.46502 * 126.03681 * 359.97438 * 15 2 1 17 17 C 1.53000 * 117.49632 * 119.71699 * 16 15 2 18 18 C 1.53002 * 60.02940 * 107.47827 * 17 16 15 19 19 H 1.08995 * 109.47221 * 270.18334 * 1 2 3 20 20 H 1.09001 * 109.47074 * 30.18703 * 1 2 3 21 21 H 1.09003 * 109.47175 * 150.18703 * 1 2 3 22 22 H 1.09001 * 109.47628 * 205.28149 * 4 3 2 23 23 H 1.08995 * 109.47142 * 325.28343 * 4 3 2 24 24 H 0.97001 * 119.99978 * 179.97438 * 8 7 5 25 25 H 1.07998 * 125.90178 * 179.71796 * 13 3 2 26 26 H 1.08999 * 115.56079 * 334.03174 * 16 15 2 27 27 H 1.09002 * 117.49833 * 214.97932 * 17 16 15 28 28 H 1.09002 * 117.49953 * 359.97438 * 17 16 15 29 29 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 30 30 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0929 0.0000 4 6 1.8433 2.5276 0.0005 5 6 1.5787 2.9696 1.4167 6 1 1.7300 2.2808 2.2346 7 6 1.1434 4.2535 1.6683 8 7 0.9121 4.6391 2.9042 9 14 0.8824 5.4451 0.2537 10 1 -0.5150 5.3332 -0.2363 11 1 1.1331 6.8318 0.7220 12 1 1.8213 5.1177 -0.8492 13 6 3.6334 0.6560 -0.0061 14 7 3.6334 -0.6524 -0.0041 15 7 2.3026 -1.0900 0.0035 16 6 1.8539 -2.4846 0.0085 17 6 2.2775 -3.3672 -1.1672 18 6 2.9165 -3.5681 0.2084 19 1 -0.3633 0.0033 1.0276 20 1 -0.3633 0.8883 -0.5167 21 1 -0.3634 -0.8917 -0.5109 22 1 2.6164 3.1582 -0.4384 23 1 0.9277 2.6149 -0.5843 24 1 0.6062 5.5424 3.0812 25 1 4.5083 1.2891 -0.0120 26 1 0.8684 -2.6600 0.4401 27 1 1.5708 -4.1234 -1.5092 28 1 2.8897 -2.9101 -1.9447 29 1 2.6302 -4.4564 0.7714 30 1 3.9490 -3.2429 0.3360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263877.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = 95.607915 kcal Electronic energy + Delta-G solvation = -13027.376353 eV Core-core repulsion = 10825.143733 eV Total energy + Delta-G solvation = -2202.232620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66119 -36.93092 -33.28149 -31.92714 -31.07766 -28.11476 -25.83662 -23.13114 -22.53599 -22.08835 -19.26460 -18.63430 -16.68633 -16.56731 -15.03000 -14.44758 -14.03060 -13.87337 -13.19261 -12.85829 -12.49734 -12.27081 -12.04869 -11.62879 -11.52805 -11.28775 -10.94449 -10.80015 -10.55312 -10.24677 -9.95242 -9.69269 -9.26451 -8.49718 -8.49476 -7.32406 -5.98835 -3.95802 2.41252 2.90598 3.33255 3.41484 3.45352 3.63123 3.78758 4.48838 4.53918 4.73761 4.86605 5.29138 5.33952 5.51029 5.53371 5.64304 5.67710 5.90935 6.05635 6.07455 6.39644 6.40551 6.51118 6.87287 7.12882 7.37569 7.49673 7.72538 7.83228 8.39132 8.63318 9.08636 9.63049 11.14688 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.058530 B = 0.007826 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.271615 B = 3576.756828 C = 3636.898103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 C -0.180 4.180 4 C 0.054 3.946 5 C -0.505 4.505 6 H 0.070 0.930 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.049 3.951 14 N -0.315 5.315 15 N -0.358 5.358 16 C 0.090 3.910 17 C -0.184 4.184 18 C -0.167 4.167 19 H 0.077 0.923 20 H 0.085 0.915 21 H 0.055 0.945 22 H 0.024 0.976 23 H 0.018 0.982 24 H 0.262 0.738 25 H 0.177 0.823 26 H 0.137 0.863 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 -12.778 -7.712 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 C -0.190 4.190 4 C 0.016 3.984 5 C -0.543 4.543 6 H 0.088 0.912 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.189 1.189 13 C -0.136 4.136 14 N -0.136 5.136 15 N -0.141 5.141 16 C -0.014 4.014 17 C -0.223 4.223 18 C -0.205 4.205 19 H 0.096 0.904 20 H 0.103 0.897 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.194 0.806 26 H 0.155 0.845 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.525 -13.787 -7.598 15.750 hybrid contribution -0.611 1.479 -0.486 1.672 sum -0.086 -12.308 -8.084 14.726 Atomic orbital electron populations 1.20301 0.87904 1.02456 1.03144 1.20684 0.94329 0.86441 1.04093 1.20220 0.91546 0.96913 1.10335 1.18097 0.95577 0.86984 0.97765 1.21057 1.44064 0.97764 0.91417 0.91173 1.25014 0.95112 0.98007 0.95354 1.69914 1.46902 1.18695 1.18926 0.86829 0.78982 0.80521 0.83313 1.20330 1.21442 1.18885 1.23722 0.98265 0.91554 1.00060 1.77101 0.96654 1.13149 1.26646 1.47612 1.03901 1.03535 1.59078 1.21568 0.98639 0.76725 1.04455 1.23428 1.04036 1.02223 0.92568 1.23239 0.99464 0.98664 0.99103 0.90422 0.89658 0.92629 0.95778 0.96420 0.92819 0.80579 0.84537 0.87883 0.88286 0.87882 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.81 36.00 0.35 -0.95 16 2 C 0.07 1.35 6.93 -82.27 -0.57 0.78 16 3 C -0.18 -3.98 5.29 -105.05 -0.56 -4.54 16 4 C 0.05 1.32 4.27 -29.03 -0.12 1.19 16 5 C -0.50 -14.44 9.65 -34.44 -0.33 -14.77 16 6 H 0.07 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 9 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.05 1.01 11.96 -17.36 -0.21 0.81 16 14 N -0.31 -6.26 11.99 30.62 0.37 -5.89 16 15 N -0.36 -6.55 3.94 -50.66 -0.20 -6.75 16 16 C 0.09 1.23 6.43 -67.89 -0.44 0.79 16 17 C -0.18 -2.06 10.45 -26.73 -0.28 -2.34 16 18 C -0.17 -1.94 10.19 -26.69 -0.27 -2.22 16 19 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 20 H 0.08 1.42 7.25 -51.93 -0.38 1.05 16 21 H 0.05 0.72 7.75 -51.93 -0.40 0.32 16 22 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 23 H 0.02 0.42 6.73 -51.93 -0.35 0.07 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.18 3.20 8.06 -52.49 -0.42 2.78 16 26 H 0.14 1.55 7.90 -51.93 -0.41 1.14 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 1.48 7.83 -51.93 -0.41 1.07 16 LS Contribution 260.13 15.07 3.92 3.92 Total: -1.00 -32.58 260.13 -6.35 -38.93 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.02 Total: -0.41 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.52 Total: -19.43 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.94 Total: -39.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.58 -6.35 -38.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263877.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.537 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds