Wall clock time and date at job start Mon Mar 30 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35313 * 126.12750 * 2 1 4 4 C 1.50701 * 126.04068 * 0.02562 * 3 2 1 5 5 C 1.50700 * 109.47142 * 85.28164 * 4 3 2 6 6 H 1.07996 * 120.00005 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00016 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99899 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99804 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46942 * 90.00324 * 9 7 5 11 11 H 1.48494 * 109.46953 * 209.99745 * 9 7 5 12 12 H 1.48494 * 109.47496 * 330.00417 * 9 7 5 13 13 C 1.39873 * 107.92250 * 180.26341 * 3 2 1 14 14 N 1.30835 * 108.20137 * 359.74311 * 13 3 2 15 15 N 1.34950 * 126.12713 * 179.81558 * 2 1 3 16 16 C 1.46502 * 126.03681 * 359.97438 * 15 2 1 17 17 C 1.53000 * 117.49632 * 119.71699 * 16 15 2 18 18 C 1.53002 * 60.02940 * 107.47827 * 17 16 15 19 19 H 1.08995 * 109.47221 * 270.18334 * 1 2 3 20 20 H 1.09001 * 109.47074 * 30.18703 * 1 2 3 21 21 H 1.09003 * 109.47175 * 150.18703 * 1 2 3 22 22 H 1.09001 * 109.47628 * 205.28149 * 4 3 2 23 23 H 1.08995 * 109.47142 * 325.28343 * 4 3 2 24 24 H 0.97001 * 119.99978 * 179.97438 * 8 7 5 25 25 H 1.07998 * 125.90178 * 179.71796 * 13 3 2 26 26 H 1.08999 * 115.56079 * 334.03174 * 16 15 2 27 27 H 1.09002 * 117.49833 * 214.97932 * 17 16 15 28 28 H 1.09002 * 117.49953 * 359.97438 * 17 16 15 29 29 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 30 30 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0929 0.0000 4 6 1.8433 2.5276 0.0005 5 6 1.5787 2.9696 1.4167 6 1 1.7300 2.2808 2.2346 7 6 1.1434 4.2535 1.6683 8 7 0.9121 4.6391 2.9042 9 14 0.8824 5.4451 0.2537 10 1 -0.5150 5.3332 -0.2363 11 1 1.1331 6.8318 0.7220 12 1 1.8213 5.1177 -0.8492 13 6 3.6334 0.6560 -0.0061 14 7 3.6334 -0.6524 -0.0041 15 7 2.3026 -1.0900 0.0035 16 6 1.8539 -2.4846 0.0085 17 6 2.2775 -3.3672 -1.1672 18 6 2.9165 -3.5681 0.2084 19 1 -0.3633 0.0033 1.0276 20 1 -0.3633 0.8883 -0.5167 21 1 -0.3634 -0.8917 -0.5109 22 1 2.6164 3.1582 -0.4384 23 1 0.9277 2.6149 -0.5843 24 1 0.6062 5.5424 3.0812 25 1 4.5083 1.2891 -0.0120 26 1 0.8684 -2.6600 0.4401 27 1 1.5708 -4.1234 -1.5092 28 1 2.8897 -2.9101 -1.9447 29 1 2.6302 -4.4564 0.7714 30 1 3.9490 -3.2429 0.3360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263877.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:37 Heat of formation + Delta-G solvation = 74.892595 kcal Electronic energy + Delta-G solvation = -13028.274636 eV Core-core repulsion = 10825.143733 eV Total energy + Delta-G solvation = -2203.130903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.13874 -37.98812 -35.31119 -33.48442 -32.83656 -29.76917 -27.47246 -24.58301 -23.96680 -23.34331 -20.63860 -20.15628 -18.88548 -17.84670 -16.33872 -16.21663 -15.43510 -15.29013 -14.87991 -14.55338 -13.98478 -13.75720 -13.57817 -13.20049 -12.89800 -12.53297 -12.47219 -12.32344 -11.99172 -11.78235 -11.58880 -11.44480 -11.28758 -10.70519 -9.89217 -8.92991 -8.22248 -6.25497 0.94204 1.40974 1.43649 1.55919 1.61845 1.99807 2.41938 2.79446 3.12217 3.46729 3.78786 3.90717 3.97932 4.26018 4.30433 4.63369 4.69060 4.74502 4.76512 4.88034 5.00832 5.09630 5.17617 5.22697 5.27769 5.63858 5.67350 5.84197 6.31553 6.40002 6.80336 6.85313 7.37559 8.94819 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.058530 B = 0.007826 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.271615 B = 3576.756828 C = 3636.898103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.072 3.928 3 C -0.226 4.226 4 C 0.065 3.935 5 C -0.509 4.509 6 H 0.020 0.980 7 C 0.005 3.995 8 N -0.955 5.955 9 Si 0.950 3.050 10 H -0.262 1.262 11 H -0.287 1.287 12 H -0.246 1.246 13 C 0.034 3.966 14 N -0.326 5.326 15 N -0.351 5.351 16 C 0.052 3.948 17 C -0.161 4.161 18 C -0.161 4.161 19 H 0.072 0.928 20 H 0.081 0.919 21 H 0.096 0.904 22 H 0.025 0.975 23 H 0.029 0.971 24 H 0.265 0.735 25 H 0.189 0.811 26 H 0.164 0.836 27 H 0.141 0.859 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -14.137 -9.647 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 C -0.237 4.237 4 C 0.027 3.973 5 C -0.547 4.547 6 H 0.038 0.962 7 C -0.191 4.191 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.170 1.170 13 C -0.150 4.150 14 N -0.148 5.148 15 N -0.134 5.134 16 C -0.050 4.050 17 C -0.199 4.199 18 C -0.198 4.198 19 H 0.091 0.909 20 H 0.099 0.901 21 H 0.114 0.886 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.206 0.794 26 H 0.181 0.819 27 H 0.159 0.841 28 H 0.099 0.901 29 H 0.154 0.846 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.419 -15.193 -9.546 17.948 hybrid contribution -0.297 1.734 0.196 1.770 sum -0.716 -13.459 -9.350 16.404 Atomic orbital electron populations 1.20391 0.85613 1.04319 1.03313 1.21129 0.95838 0.86392 1.02093 1.20215 0.92837 0.96647 1.13969 1.17876 0.95978 0.88627 0.94823 1.21239 1.43802 0.97181 0.92478 0.96196 1.25980 0.94655 1.00091 0.98363 1.70079 1.48374 1.19476 1.21659 0.85655 0.79926 0.77339 0.79738 1.18701 1.21255 1.16972 1.23947 0.98439 0.92119 1.00532 1.77038 0.98055 1.12716 1.26959 1.48002 1.03062 1.05210 1.57168 1.22255 1.00503 0.74683 1.07542 1.23483 1.03678 1.01346 0.91412 1.23326 0.97703 0.98720 1.00102 0.90918 0.90052 0.88554 0.95653 0.95313 0.92599 0.79438 0.81906 0.84103 0.90071 0.84589 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.42 9.81 71.23 0.70 -1.72 16 2 C 0.07 2.79 6.93 41.40 0.29 3.07 16 3 C -0.23 -10.09 5.29 -20.14 -0.11 -10.20 16 4 C 0.07 3.18 4.27 29.10 0.12 3.30 16 5 C -0.51 -29.94 9.65 25.60 0.25 -29.69 16 6 H 0.02 1.32 7.98 -2.91 -0.02 1.30 16 7 C 0.01 0.30 5.47 84.66 0.46 0.77 16 8 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 9 Si 0.95 44.08 27.47 68.60 1.88 45.96 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 13 C 0.03 1.41 11.96 85.24 1.02 2.43 16 14 N -0.33 -12.97 11.99 -57.02 -0.68 -13.65 16 15 N -0.35 -12.48 3.94 -314.19 -1.24 -13.72 16 16 C 0.05 1.28 6.43 45.01 0.29 1.57 16 17 C -0.16 -3.05 10.45 30.60 0.32 -2.73 16 18 C -0.16 -3.31 10.19 30.62 0.31 -3.00 16 19 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 20 H 0.08 2.58 7.25 -2.39 -0.02 2.57 16 21 H 0.10 2.15 7.75 -2.39 -0.02 2.14 16 22 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 23 H 0.03 1.32 6.73 -2.39 -0.02 1.30 16 24 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 25 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 26 H 0.16 3.07 7.90 -2.39 -0.02 3.05 16 27 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.09 2.22 7.83 -2.39 -0.02 2.20 16 Total: -1.00 -72.70 260.13 4.98 -67.72 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.06 Total: 10.08 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 3.65 Total: -36.18 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -1.62 Total: -87.58 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -72.70 4.98 -67.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263877.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.609 kcal (2) G-P(sol) polarization free energy of solvation -72.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds