Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 N 1.28480 * 124.86633 * 269.70138 * 3 2 1 5 5 C 1.32753 * 109.93104 * 179.82490 * 4 3 2 6 6 C 1.41435 * 126.56405 * 180.13611 * 5 4 3 7 7 H 1.08000 * 119.99854 * 180.33593 * 6 5 4 8 8 C 1.39850 * 119.99996 * 0.34330 * 6 5 4 9 9 N 1.30889 * 120.00096 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99916 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47050 * 89.99732 * 10 8 6 12 12 H 1.48497 * 109.47085 * 210.00015 * 10 8 6 13 13 H 1.48497 * 109.46877 * 330.00029 * 10 8 6 14 14 C 1.42232 * 106.86916 * 0.42431 * 5 4 3 15 15 C 1.35072 * 105.54318 * 359.74907 * 14 5 4 16 16 C 1.50699 * 126.31124 * 179.97438 * 15 14 5 17 17 C 1.53000 * 117.49811 * 33.65909 * 16 15 14 18 18 C 1.52999 * 60.00029 * 252.51226 * 17 16 15 19 19 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 24 24 H 0.96998 * 120.00155 * 179.97438 * 9 8 6 25 25 H 1.07997 * 127.22990 * 179.78756 * 14 5 4 26 26 H 1.09004 * 115.55164 * 179.37036 * 16 15 14 27 27 H 1.08999 * 117.50091 * 0.02562 * 17 16 15 28 28 H 1.09006 * 117.49726 * 145.02188 * 17 16 15 29 29 H 1.08993 * 117.49852 * 252.50499 * 18 17 16 30 30 H 1.09006 * 117.51290 * 107.48360 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2683 2.0718 -1.0541 5 6 2.6906 3.2830 -0.7120 6 6 3.0602 4.3263 -1.5925 7 1 3.3956 5.2735 -1.1967 8 6 2.9911 4.1315 -2.9756 9 7 2.5849 2.9834 -3.4554 10 14 3.4786 5.5097 -4.1385 11 1 4.9277 5.4080 -4.4467 12 1 2.6960 5.3968 -5.3955 13 1 3.1996 6.8199 -3.4977 14 6 2.7067 3.3283 0.7095 15 6 2.2773 2.1136 1.1152 16 6 2.1157 1.6547 2.5415 17 6 1.6875 2.6983 3.5751 18 6 3.1243 2.1727 3.5687 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 2.5367 2.8483 -4.4147 25 1 3.0000 4.1595 1.3335 26 1 1.7447 0.6377 2.6690 27 1 1.5222 3.7167 3.2234 28 1 1.0343 2.3681 4.3829 29 1 3.4165 1.4968 4.3723 30 1 3.9050 2.8452 3.2128 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273180.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = 91.900381 kcal Electronic energy + Delta-G solvation = -13234.428894 eV Core-core repulsion = 11032.035504 eV Total energy + Delta-G solvation = -2202.393391 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48764 -36.55146 -33.91362 -32.50319 -28.87653 -28.48662 -25.56121 -22.83644 -22.02093 -21.84713 -19.65956 -18.45973 -16.65167 -15.70213 -14.56619 -14.43758 -14.17059 -13.78506 -13.45862 -12.63088 -12.25323 -11.78202 -11.57993 -11.26171 -11.20523 -11.01800 -10.73172 -10.67684 -10.29649 -10.23241 -10.11979 -9.75445 -9.03388 -8.25711 -7.33471 -7.07769 -6.16640 -4.01500 3.22333 3.30131 3.32808 3.34316 4.08113 4.29716 4.43517 4.57009 5.09600 5.23612 5.39934 5.43853 5.65003 5.72800 5.77168 5.86269 5.91792 6.00013 6.16023 6.21523 6.39161 6.48700 6.56459 6.87398 7.39183 7.49473 7.57807 7.95216 8.47189 8.81586 9.13950 9.39749 10.44481 10.81969 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.037793 B = 0.009965 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.695259 B = 2809.192692 C = 3398.881845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 N -0.328 5.328 4 N -0.323 5.323 5 C 0.189 3.811 6 C -0.450 4.450 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.785 5.785 10 Si 0.901 3.099 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.267 1.267 14 C -0.283 4.283 15 C 0.014 3.986 16 C -0.076 4.076 17 C -0.172 4.172 18 C -0.172 4.172 19 H 0.054 0.946 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.265 0.735 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -4.136 8.663 9.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.112 5.112 4 N -0.154 5.154 5 C 0.040 3.960 6 C -0.489 4.489 7 H 0.094 0.906 8 C -0.145 4.145 9 N -0.414 5.414 10 Si 0.727 3.273 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.191 1.191 14 C -0.314 4.314 15 C -0.111 4.111 16 C -0.096 4.096 17 C -0.209 4.209 18 C -0.210 4.210 19 H 0.073 0.927 20 H 0.080 0.920 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.136 0.864 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.376 -5.149 7.533 9.429 hybrid contribution 0.371 1.099 0.113 1.165 sum -2.005 -4.050 7.646 8.882 Atomic orbital electron populations 1.22145 0.95722 1.01421 1.03009 1.21256 0.94332 0.80744 1.02479 1.45462 1.51407 1.11181 1.03145 1.74739 1.27447 1.06037 1.07178 1.19259 0.95873 0.91344 0.89536 1.18490 1.42719 0.98065 0.89616 0.90614 1.25718 0.94195 0.95758 0.98837 1.69975 1.35891 1.22532 1.13039 0.86444 0.78802 0.82238 0.79780 1.20083 1.20810 1.19108 1.21255 1.17016 0.96933 0.96239 1.20092 1.09493 0.94048 0.87493 1.20161 1.04323 0.97582 0.87491 1.22977 0.97487 0.99667 1.00807 1.22985 0.93188 1.03913 1.00934 0.92672 0.91964 0.91582 0.91015 0.89759 0.92423 0.86401 0.88368 0.88389 0.89268 0.89261 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.13 2.47 6.75 -4.04 -0.03 2.44 16 3 N -0.33 -7.88 3.32 -56.98 -0.19 -8.07 16 4 N -0.32 -9.33 10.24 32.34 0.33 -9.00 16 5 C 0.19 5.55 6.78 -84.72 -0.57 4.98 16 6 C -0.45 -13.23 9.42 -37.76 -0.36 -13.58 16 7 H 0.08 2.11 7.84 -52.49 -0.41 1.69 16 8 C 0.07 2.04 5.49 -17.35 -0.10 1.94 16 9 N -0.79 -23.17 11.97 55.54 0.66 -22.50 16 10 Si 0.90 20.75 29.56 -169.99 -5.02 15.73 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 C -0.28 -7.19 10.01 -39.17 -0.39 -7.58 16 15 C 0.01 0.31 6.61 -81.91 -0.54 -0.23 16 16 C -0.08 -1.29 5.94 -91.77 -0.55 -1.84 16 17 C -0.17 -2.52 10.05 -26.73 -0.27 -2.79 16 18 C -0.17 -2.53 10.05 -26.73 -0.27 -2.80 16 19 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 22 H 0.07 1.09 7.14 -51.93 -0.37 0.72 16 23 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 24 H 0.27 7.21 8.30 -40.82 -0.34 6.87 16 25 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 26 H 0.10 1.48 7.19 -51.93 -0.37 1.11 16 27 H 0.10 1.55 7.94 -51.93 -0.41 1.14 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.55 7.97 -51.93 -0.41 1.14 16 LS Contribution 261.04 15.07 3.93 3.93 Total: -1.00 -32.93 261.04 -7.05 -39.98 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.08 Total: 1.65 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.69 Total: -21.73 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.81 Total: -39.57 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.93 -7.05 -39.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273180.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.882 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds