Wall clock time and date at job start Mon Mar 30 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 N 1.28480 * 124.86633 * 269.70138 * 3 2 1 5 5 C 1.32753 * 109.93104 * 179.82490 * 4 3 2 6 6 C 1.41435 * 126.56405 * 180.13611 * 5 4 3 7 7 H 1.08000 * 119.99854 * 180.33593 * 6 5 4 8 8 C 1.39850 * 119.99996 * 0.34330 * 6 5 4 9 9 N 1.30889 * 120.00096 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99916 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47050 * 89.99732 * 10 8 6 12 12 H 1.48497 * 109.47085 * 210.00015 * 10 8 6 13 13 H 1.48497 * 109.46877 * 330.00029 * 10 8 6 14 14 C 1.42232 * 106.86916 * 0.42431 * 5 4 3 15 15 C 1.35072 * 105.54318 * 359.74907 * 14 5 4 16 16 C 1.50699 * 126.31124 * 179.97438 * 15 14 5 17 17 C 1.53000 * 117.49811 * 33.65909 * 16 15 14 18 18 C 1.52999 * 60.00029 * 252.51226 * 17 16 15 19 19 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 24 24 H 0.96998 * 120.00155 * 179.97438 * 9 8 6 25 25 H 1.07997 * 127.22990 * 179.78756 * 14 5 4 26 26 H 1.09004 * 115.55164 * 179.37036 * 16 15 14 27 27 H 1.08999 * 117.50091 * 0.02562 * 17 16 15 28 28 H 1.09006 * 117.49726 * 145.02188 * 17 16 15 29 29 H 1.08993 * 117.49852 * 252.50499 * 18 17 16 30 30 H 1.09006 * 117.51290 * 107.48360 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2683 2.0718 -1.0541 5 6 2.6906 3.2830 -0.7120 6 6 3.0602 4.3263 -1.5925 7 1 3.3956 5.2735 -1.1967 8 6 2.9911 4.1315 -2.9756 9 7 2.5849 2.9834 -3.4554 10 14 3.4786 5.5097 -4.1385 11 1 4.9277 5.4080 -4.4467 12 1 2.6960 5.3968 -5.3955 13 1 3.1996 6.8199 -3.4977 14 6 2.7067 3.3283 0.7095 15 6 2.2773 2.1136 1.1152 16 6 2.1157 1.6547 2.5415 17 6 1.6875 2.6983 3.5751 18 6 3.1243 2.1727 3.5687 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 2.5367 2.8483 -4.4147 25 1 3.0000 4.1595 1.3335 26 1 1.7447 0.6377 2.6690 27 1 1.5222 3.7167 3.2234 28 1 1.0343 2.3681 4.3829 29 1 3.4165 1.4968 4.3723 30 1 3.9050 2.8452 3.2128 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261273180.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:41 Heat of formation + Delta-G solvation = 71.081012 kcal Electronic energy + Delta-G solvation = -13235.331690 eV Core-core repulsion = 11032.035504 eV Total energy + Delta-G solvation = -2203.296186 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.36812 -37.86345 -35.76011 -34.36835 -30.71498 -30.33186 -27.52329 -24.41535 -23.42006 -23.15103 -21.61579 -20.25084 -18.34771 -17.59831 -16.45787 -15.91847 -15.77695 -15.18715 -15.08992 -14.45866 -13.93367 -13.33433 -13.18215 -12.90403 -12.78708 -12.53811 -12.31820 -12.27038 -12.03340 -11.69707 -11.66970 -11.36073 -11.03148 -10.27731 -9.33847 -8.96224 -8.26711 -6.19762 1.40217 1.40647 1.55410 1.62464 2.33356 2.41937 2.47256 3.19370 3.65381 3.77514 3.90880 4.08846 4.21024 4.29736 4.34430 4.43536 4.68387 4.80812 4.83484 4.98108 5.01524 5.13038 5.22518 5.35624 5.37351 5.51877 5.69415 5.93293 6.45385 6.88092 7.02905 7.26590 8.42324 8.73894 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.037793 B = 0.009965 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.695259 B = 2809.192692 C = 3398.881845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.121 3.879 3 N -0.335 5.335 4 N -0.364 5.364 5 C 0.146 3.854 6 C -0.489 4.489 7 H 0.076 0.924 8 C 0.020 3.980 9 N -0.826 5.826 10 Si 0.984 3.016 11 H -0.266 1.266 12 H -0.273 1.273 13 H -0.259 1.259 14 C -0.321 4.321 15 C 0.037 3.963 16 C -0.101 4.101 17 C -0.156 4.156 18 C -0.157 4.157 19 H 0.059 0.941 20 H 0.106 0.894 21 H 0.029 0.971 22 H 0.113 0.887 23 H 0.075 0.925 24 H 0.270 0.730 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 -4.967 10.458 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.000 4.000 3 N -0.119 5.119 4 N -0.196 5.196 5 C -0.004 4.004 6 C -0.528 4.528 7 H 0.094 0.906 8 C -0.193 4.193 9 N -0.456 5.456 10 Si 0.806 3.194 11 H -0.191 1.191 12 H -0.198 1.198 13 H -0.182 1.182 14 C -0.351 4.351 15 C -0.090 4.090 16 C -0.121 4.121 17 C -0.194 4.194 18 C -0.195 4.195 19 H 0.078 0.922 20 H 0.125 0.875 21 H 0.049 0.951 22 H 0.131 0.869 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.143 0.857 26 H 0.146 0.854 27 H 0.097 0.903 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.702 -5.994 9.341 11.423 hybrid contribution 0.440 1.245 -0.313 1.357 sum -2.262 -4.749 9.028 10.449 Atomic orbital electron populations 1.22058 0.93770 1.03827 1.01434 1.21741 0.95943 0.78213 1.04067 1.45931 1.50584 1.12734 1.02697 1.74584 1.28531 1.06578 1.09886 1.19744 0.97046 0.91983 0.91617 1.18878 1.44273 0.98577 0.91046 0.90628 1.26695 0.93626 0.98673 1.00273 1.70113 1.37044 1.24855 1.13574 0.85188 0.78665 0.78513 0.77051 1.19143 1.19825 1.18236 1.21394 1.19759 0.98992 0.94945 1.20763 1.05672 0.92686 0.89830 1.20378 1.07580 0.99744 0.84400 1.23060 0.98242 0.97981 1.00129 1.23068 0.92612 1.03552 1.00235 0.92153 0.87511 0.95136 0.86928 0.90644 0.92081 0.85725 0.85383 0.90264 0.85542 0.85518 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.24 71.98 0.74 -3.90 16 2 C 0.12 4.27 6.75 86.38 0.58 4.86 16 3 N -0.34 -16.23 3.32 -334.18 -1.11 -17.34 16 4 N -0.36 -21.87 10.24 -51.60 -0.53 -22.40 16 5 C 0.15 8.99 6.78 40.78 0.28 9.27 16 6 C -0.49 -30.14 9.42 23.45 0.22 -29.92 16 7 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 8 C 0.02 1.19 5.49 85.22 0.47 1.66 16 9 N -0.83 -50.63 11.97 21.81 0.26 -50.37 16 10 Si 0.98 43.81 29.56 68.60 2.03 45.84 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 14 C -0.32 -16.83 10.01 22.53 0.23 -16.60 16 15 C 0.04 1.67 6.61 41.20 0.27 1.95 16 16 C -0.10 -3.15 5.94 -11.54 -0.07 -3.22 16 17 C -0.16 -4.07 10.05 30.59 0.31 -3.76 16 18 C -0.16 -4.08 10.05 30.59 0.31 -3.77 16 19 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 20 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 21 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 22 H 0.11 3.03 7.14 -2.39 -0.02 3.01 16 23 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 24 H 0.27 15.14 8.30 -92.71 -0.77 14.37 16 25 H 0.12 6.07 8.06 -2.91 -0.02 6.04 16 26 H 0.13 3.23 7.19 -2.38 -0.02 3.21 16 27 H 0.08 2.38 7.94 -2.39 -0.02 2.36 16 28 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 2.38 7.97 -2.38 -0.02 2.36 16 Total: -1.00 -76.35 261.04 5.10 -71.25 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.12 Total: 16.46 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 3.33 Total: -43.44 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -1.38 Total: -90.11 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -76.35 5.10 -71.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273180.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.334 kcal (2) G-P(sol) polarization free energy of solvation -76.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds