Wall clock time and date at job start Mon Mar 30 2020 02:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39876 * 125.67284 * 2 1 4 4 C 1.30318 * 109.23071 * 180.02562 * 3 2 1 5 5 C 1.41887 * 108.04886 * 0.02562 * 4 3 2 6 6 C 1.41588 * 126.56080 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00090 * 199.69544 * 6 5 4 8 8 C 1.39695 * 120.00174 * 19.70156 * 6 5 4 9 9 N 1.31025 * 120.00197 * 195.69546 * 8 6 5 10 10 Si 1.86801 * 119.99898 * 15.68799 * 8 6 5 11 11 H 1.48508 * 109.47499 * 270.00500 * 10 8 6 12 12 H 1.48499 * 109.47141 * 150.00464 * 10 8 6 13 13 H 1.48496 * 109.46987 * 30.00549 * 10 8 6 14 14 C 1.34498 * 125.67718 * 180.34092 * 2 1 3 15 15 C 1.50700 * 126.40723 * 0.02562 * 14 2 1 16 16 C 1.53780 * 113.61486 * 37.64486 * 15 14 2 17 17 C 1.53781 * 87.07977 * 220.02040 * 16 15 14 18 18 C 1.53776 * 113.61217 * 300.14867 * 15 14 2 19 19 H 1.09004 * 109.47135 * 89.97424 * 1 2 3 20 20 H 1.08994 * 109.47420 * 209.97376 * 1 2 3 21 21 H 1.08994 * 109.47419 * 329.97888 * 1 2 3 22 22 H 1.08004 * 125.97715 * 180.02562 * 4 3 2 23 23 H 0.96999 * 120.00206 * 354.97430 * 9 8 6 24 24 H 1.09005 * 112.85077 * 168.95800 * 15 14 2 25 25 H 1.09002 * 113.61650 * 334.56731 * 16 15 14 26 26 H 1.09003 * 113.61207 * 105.47252 * 16 15 14 27 27 H 1.08994 * 113.61857 * 270.88211 * 17 16 15 28 28 H 1.09010 * 113.68785 * 139.99338 * 17 16 15 29 29 H 1.09000 * 113.61760 * 254.53291 * 18 15 14 30 30 H 1.09001 * 113.61723 * 25.35027 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2807 1.1363 0.0000 4 6 3.5306 0.7674 -0.0006 5 6 3.5704 -0.6509 -0.0015 6 6 4.7309 -1.4621 -0.0029 7 1 4.6688 -2.4929 -0.3187 8 6 5.9562 -0.9290 0.4045 9 7 7.0706 -1.5574 0.1214 10 14 6.0059 0.6797 1.3526 11 1 6.1119 1.8133 0.3991 12 1 7.1821 0.6839 2.2591 13 1 4.7634 0.8210 2.1533 14 6 2.2494 -1.0925 -0.0065 15 6 1.7859 -2.5264 -0.0156 16 6 0.5351 -2.7640 -0.8781 17 6 0.0479 -3.7132 0.2295 18 6 0.9226 -2.9024 1.2002 19 1 -0.3633 0.0005 -1.0277 20 1 -0.3634 -0.8902 0.5134 21 1 -0.3634 0.8897 0.5141 22 1 4.3865 1.4261 -0.0003 23 1 7.0416 -2.4275 -0.3062 24 1 2.5938 -3.2313 -0.2121 25 1 -0.0874 -1.8773 -0.9983 26 1 0.7450 -3.2663 -1.8225 27 1 0.3798 -4.7431 0.0991 28 1 -1.0198 -3.6352 0.4347 29 1 1.4452 -3.5163 1.9338 30 1 0.4072 -2.0533 1.6492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:24 Heat of formation + Delta-G solvation = 89.826799 kcal Electronic energy + Delta-G solvation = -13560.452214 eV Core-core repulsion = 11357.968906 eV Total energy + Delta-G solvation = -2202.483308 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08702 -37.71995 -33.60606 -31.91222 -29.65341 -27.06459 -25.24694 -24.77690 -23.19074 -20.50560 -19.22508 -18.58341 -17.66094 -15.44489 -15.14671 -14.51616 -14.15636 -13.69079 -13.06250 -12.79994 -12.47319 -12.42429 -11.82715 -11.68902 -11.58057 -11.50581 -10.74381 -10.20229 -10.06028 -9.87616 -9.71927 -9.64618 -9.03077 -8.86944 -7.98857 -7.36802 -6.87293 -4.02139 2.94202 3.27261 3.45933 3.59400 3.69872 4.03725 4.25462 5.02845 5.03685 5.11857 5.28085 5.36382 5.57275 5.72081 5.76287 5.86982 6.02136 6.07637 6.13026 6.21584 6.23080 6.36905 6.53311 6.77174 7.04061 7.36299 7.63845 7.95141 8.25569 8.54239 8.74029 9.06130 9.19460 10.45768 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.038068 B = 0.012362 C = 0.010143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.351088 B = 2264.439272 C = 2759.804743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.376 5.376 3 N -0.310 5.310 4 C -0.035 4.035 5 C -0.016 4.016 6 C -0.508 4.508 7 H 0.068 0.932 8 C 0.038 3.962 9 N -0.855 5.855 10 Si 1.067 2.933 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.268 1.268 14 C -0.070 4.070 15 C -0.004 4.004 16 C -0.154 4.154 17 C -0.142 4.142 18 C -0.139 4.139 19 H 0.055 0.945 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.162 0.838 23 H 0.278 0.722 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 -1.402 0.957 11.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.165 5.165 3 N -0.134 5.134 4 C -0.220 4.220 5 C -0.026 4.026 6 C -0.542 4.542 7 H 0.086 0.914 8 C -0.175 4.175 9 N -0.482 5.482 10 Si 0.896 3.104 11 H -0.208 1.208 12 H -0.218 1.218 13 H -0.193 1.193 14 C -0.192 4.192 15 C -0.024 4.024 16 C -0.192 4.192 17 C -0.179 4.179 18 C -0.177 4.177 19 H 0.073 0.927 20 H 0.097 0.903 21 H 0.089 0.911 22 H 0.179 0.821 23 H 0.089 0.911 24 H 0.119 0.881 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.937 0.609 1.602 11.071 hybrid contribution -0.445 -1.876 -0.827 2.098 sum -11.382 -1.267 0.775 11.479 Atomic orbital electron populations 1.21670 0.77629 1.02736 1.01299 1.47188 1.04170 1.03414 1.61715 1.76439 1.02605 1.08927 1.25383 1.23810 0.94067 0.96208 1.07901 1.18116 0.92220 0.90852 1.01459 1.19657 0.92398 0.98941 1.43208 0.91374 1.26738 0.91393 1.04729 0.94675 1.70627 1.29007 1.14721 1.33878 0.83750 0.75974 0.73753 0.76937 1.20770 1.21796 1.19342 1.20501 0.90328 0.88008 1.20389 1.20538 0.95317 0.91729 0.94849 1.23342 0.98646 0.99573 0.97594 1.22820 0.98953 0.98585 0.97552 1.23073 0.98093 0.99325 0.97182 0.92700 0.90260 0.91091 0.82112 0.91124 0.88096 0.89886 0.91984 0.90450 0.92119 0.91630 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.74 9.44 59.85 0.56 2.30 16 2 N -0.38 -8.21 3.98 -62.95 -0.25 -8.46 16 3 N -0.31 -7.55 12.47 30.97 0.39 -7.17 16 4 C -0.04 -0.90 9.32 -16.80 -0.16 -1.06 16 5 C -0.02 -0.44 5.46 -106.84 -0.58 -1.02 16 6 C -0.51 -14.28 9.48 -37.76 -0.36 -14.64 16 7 H 0.07 1.97 7.42 -52.49 -0.39 1.58 16 8 C 0.04 1.07 5.50 -17.35 -0.10 0.97 16 9 N -0.86 -24.49 13.67 55.54 0.76 -23.74 16 10 Si 1.07 25.41 24.91 -169.99 -4.23 21.18 16 11 H -0.28 -6.27 6.59 56.52 0.37 -5.90 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.39 6.65 56.52 0.38 -6.01 16 14 C -0.07 -1.64 6.25 -81.04 -0.51 -2.15 16 15 C 0.00 -0.08 4.03 -90.96 -0.37 -0.45 16 16 C -0.15 -2.38 7.18 -25.92 -0.19 -2.56 16 17 C -0.14 -1.88 8.08 -25.92 -0.21 -2.09 16 18 C -0.14 -2.22 7.18 -25.92 -0.19 -2.41 16 19 H 0.05 0.78 7.50 -51.93 -0.39 0.40 16 20 H 0.08 1.11 4.51 -51.93 -0.23 0.87 16 21 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.16 3.93 4.29 -52.48 -0.22 3.71 16 23 H 0.28 7.80 8.73 -40.82 -0.36 7.44 16 24 H 0.10 2.08 7.35 -51.93 -0.38 1.69 16 25 H 0.08 1.23 4.43 -51.93 -0.23 1.00 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.19 6.26 -51.93 -0.33 0.87 16 LS Contribution 238.48 15.07 3.59 3.59 Total: -1.00 -30.55 238.48 -5.32 -35.88 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.49 Total: 1.81 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -2.08 Total: -23.10 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.89 Total: -39.37 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.23 Total: 21.18 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.55 -5.32 -35.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.705 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds