Wall clock time and date at job start Mon Mar 30 2020 02:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39876 * 125.67284 * 2 1 4 4 C 1.30318 * 109.23071 * 180.02562 * 3 2 1 5 5 C 1.41887 * 108.04886 * 0.02562 * 4 3 2 6 6 C 1.41588 * 126.56080 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00090 * 199.69544 * 6 5 4 8 8 C 1.39695 * 120.00174 * 19.70156 * 6 5 4 9 9 N 1.31025 * 120.00197 * 195.69546 * 8 6 5 10 10 Si 1.86801 * 119.99898 * 15.68799 * 8 6 5 11 11 H 1.48508 * 109.47499 * 270.00500 * 10 8 6 12 12 H 1.48499 * 109.47141 * 150.00464 * 10 8 6 13 13 H 1.48496 * 109.46987 * 30.00549 * 10 8 6 14 14 C 1.34498 * 125.67718 * 180.34092 * 2 1 3 15 15 C 1.50700 * 126.40723 * 0.02562 * 14 2 1 16 16 C 1.53780 * 113.61486 * 37.64486 * 15 14 2 17 17 C 1.53781 * 87.07977 * 220.02040 * 16 15 14 18 18 C 1.53776 * 113.61217 * 300.14867 * 15 14 2 19 19 H 1.09004 * 109.47135 * 89.97424 * 1 2 3 20 20 H 1.08994 * 109.47420 * 209.97376 * 1 2 3 21 21 H 1.08994 * 109.47419 * 329.97888 * 1 2 3 22 22 H 1.08004 * 125.97715 * 180.02562 * 4 3 2 23 23 H 0.96999 * 120.00206 * 354.97430 * 9 8 6 24 24 H 1.09005 * 112.85077 * 168.95800 * 15 14 2 25 25 H 1.09002 * 113.61650 * 334.56731 * 16 15 14 26 26 H 1.09003 * 113.61207 * 105.47252 * 16 15 14 27 27 H 1.08994 * 113.61857 * 270.88211 * 17 16 15 28 28 H 1.09010 * 113.68785 * 139.99338 * 17 16 15 29 29 H 1.09000 * 113.61760 * 254.53291 * 18 15 14 30 30 H 1.09001 * 113.61723 * 25.35027 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2807 1.1363 0.0000 4 6 3.5306 0.7674 -0.0006 5 6 3.5704 -0.6509 -0.0015 6 6 4.7309 -1.4621 -0.0029 7 1 4.6688 -2.4929 -0.3187 8 6 5.9562 -0.9290 0.4045 9 7 7.0706 -1.5574 0.1214 10 14 6.0059 0.6797 1.3526 11 1 6.1119 1.8133 0.3991 12 1 7.1821 0.6839 2.2591 13 1 4.7634 0.8210 2.1533 14 6 2.2494 -1.0925 -0.0065 15 6 1.7859 -2.5264 -0.0156 16 6 0.5351 -2.7640 -0.8781 17 6 0.0479 -3.7132 0.2295 18 6 0.9226 -2.9024 1.2002 19 1 -0.3633 0.0005 -1.0277 20 1 -0.3634 -0.8902 0.5134 21 1 -0.3634 0.8897 0.5141 22 1 4.3865 1.4261 -0.0003 23 1 7.0416 -2.4275 -0.3062 24 1 2.5938 -3.2313 -0.2121 25 1 -0.0874 -1.8773 -0.9983 26 1 0.7450 -3.2663 -1.8225 27 1 0.3798 -4.7431 0.0991 28 1 -1.0198 -3.6352 0.4347 29 1 1.4452 -3.5163 1.9338 30 1 0.4072 -2.0533 1.6492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:23 Heat of formation + Delta-G solvation = 69.370073 kcal Electronic energy + Delta-G solvation = -13561.339284 eV Core-core repulsion = 11357.968906 eV Total energy + Delta-G solvation = -2203.370378 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86093 -39.16290 -35.59743 -33.66289 -31.50715 -28.75710 -26.54853 -26.23127 -25.06154 -22.35381 -20.72517 -20.22732 -19.64833 -17.11131 -16.53852 -16.13884 -15.94266 -15.35280 -14.94326 -14.36944 -14.14192 -13.92570 -13.33406 -13.15439 -13.08864 -12.97196 -12.58692 -11.94366 -11.66148 -11.33649 -11.27429 -11.18547 -10.97396 -10.86931 -9.76430 -9.38575 -8.98156 -6.13849 1.10229 1.35399 1.54014 1.73677 2.01333 2.05166 2.31421 3.29016 3.74635 3.79269 3.84843 3.89479 4.15930 4.33343 4.44449 4.47973 4.58035 4.75884 4.81221 4.87244 5.05480 5.10241 5.11479 5.15504 5.47568 5.56556 5.70265 5.81452 6.37254 6.41710 6.77860 7.06101 7.19985 8.32770 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.038068 B = 0.012362 C = 0.010143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.351088 B = 2264.439272 C = 2759.804743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.365 5.365 3 N -0.324 5.324 4 C -0.050 4.050 5 C -0.073 4.073 6 C -0.526 4.526 7 H 0.038 0.962 8 C -0.002 4.002 9 N -0.887 5.887 10 Si 1.104 2.896 11 H -0.259 1.259 12 H -0.283 1.283 13 H -0.270 1.270 14 C -0.036 4.036 15 C -0.034 4.034 16 C -0.145 4.145 17 C -0.118 4.118 18 C -0.134 4.134 19 H 0.081 0.919 20 H 0.105 0.895 21 H 0.091 0.909 22 H 0.166 0.834 23 H 0.267 0.733 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 -1.073 1.310 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.153 5.153 3 N -0.149 5.149 4 C -0.232 4.232 5 C -0.083 4.083 6 C -0.561 4.561 7 H 0.057 0.943 8 C -0.209 4.209 9 N -0.516 5.516 10 Si 0.928 3.072 11 H -0.185 1.185 12 H -0.210 1.210 13 H -0.195 1.195 14 C -0.162 4.162 15 C -0.055 4.055 16 C -0.182 4.182 17 C -0.155 4.155 18 C -0.172 4.172 19 H 0.099 0.901 20 H 0.123 0.877 21 H 0.109 0.891 22 H 0.182 0.818 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.425 0.957 1.940 14.586 hybrid contribution 0.327 -2.060 -0.978 2.304 sum -14.097 -1.104 0.962 14.173 Atomic orbital electron populations 1.22228 0.73672 1.05125 1.03726 1.47755 1.06427 1.02312 1.58804 1.76407 1.02249 1.09752 1.26474 1.23865 0.94897 0.95801 1.08682 1.18333 0.93231 0.91663 1.05105 1.19594 0.93933 0.97996 1.44567 0.94346 1.27823 0.91002 1.07152 0.94942 1.70714 1.29512 1.14934 1.36485 0.83269 0.75923 0.71608 0.76445 1.18507 1.20975 1.19544 1.21233 0.89922 0.90258 1.14771 1.20856 0.96703 0.88605 0.99310 1.23329 0.96025 1.00894 0.97989 1.22739 1.00398 0.98140 0.94241 1.23055 0.97754 1.00143 0.96280 0.90094 0.87671 0.89078 0.81765 0.92346 0.90600 0.88500 0.91614 0.89485 0.88650 0.91878 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.49 9.44 127.77 1.21 3.69 16 2 N -0.37 -14.99 3.98 -353.08 -1.41 -16.40 16 3 N -0.32 -15.26 12.47 -55.93 -0.70 -15.95 16 4 C -0.05 -2.56 9.32 85.82 0.80 -1.76 16 5 C -0.07 -3.94 5.46 -21.30 -0.12 -4.05 16 6 C -0.53 -31.05 9.48 23.45 0.22 -30.83 16 7 H 0.04 2.39 7.42 -2.91 -0.02 2.37 16 8 C 0.00 -0.14 5.50 85.17 0.47 0.33 16 9 N -0.89 -53.31 13.67 21.79 0.30 -53.01 16 10 Si 1.10 52.48 24.91 68.60 1.71 54.19 16 11 H -0.26 -11.27 6.59 99.48 0.66 -10.62 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.27 -12.76 6.65 99.48 0.66 -12.10 16 14 C -0.04 -1.65 6.25 42.40 0.27 -1.38 16 15 C -0.03 -1.27 4.03 -11.02 -0.04 -1.31 16 16 C -0.14 -3.91 7.18 31.12 0.22 -3.69 16 17 C -0.12 -2.55 8.08 31.12 0.25 -2.30 16 18 C -0.13 -3.86 7.18 31.12 0.22 -3.64 16 19 H 0.08 1.86 7.50 -2.39 -0.02 1.85 16 20 H 0.11 2.33 4.51 -2.39 -0.01 2.31 16 21 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.17 8.04 4.29 -2.91 -0.01 8.03 16 23 H 0.27 15.98 8.73 -92.71 -0.81 15.17 16 24 H 0.08 3.20 7.35 -2.38 -0.02 3.18 16 25 H 0.10 2.35 4.43 -2.39 -0.01 2.33 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.26 6.26 -2.39 -0.01 2.25 16 Total: -1.00 -69.02 238.48 4.41 -64.60 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.01 Total: 11.52 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.50 Total: -44.94 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.81 Total: -85.37 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 1.71 Total: 54.19 kcal Total: -69.02 4.41 -64.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.972 kcal (2) G-P(sol) polarization free energy of solvation -69.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds