Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47301 * 2 1 4 4 C 1.37685 * 119.84328 * 269.98551 * 3 2 1 5 5 C 1.40742 * 119.89543 * 179.97438 * 4 3 2 6 6 C 1.41414 * 120.20632 * 180.02562 * 5 4 3 7 7 H 1.07990 * 120.00208 * 24.40003 * 6 5 4 8 8 C 1.39935 * 119.99609 * 204.40344 * 6 5 4 9 9 N 1.30827 * 120.00201 * 17.83089 * 8 6 5 10 10 Si 1.86796 * 119.99610 * 197.83111 * 8 6 5 11 11 H 1.48501 * 109.47197 * 60.00065 * 10 8 6 12 12 H 1.48497 * 109.47271 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47562 * 299.99846 * 10 8 6 14 14 C 1.40600 * 119.58602 * 0.03716 * 5 4 3 15 15 C 1.38280 * 119.67640 * 359.97438 * 14 5 4 16 16 N 1.39684 * 119.95129 * 179.97438 * 15 14 5 17 17 N 1.36602 * 119.99996 * 0.02562 * 16 15 14 18 18 C 1.38486 * 119.83433 * 89.99954 * 3 2 1 19 19 H 1.09004 * 109.46699 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46833 * 299.99765 * 1 2 3 21 21 H 1.08998 * 109.47011 * 59.99770 * 1 2 3 22 22 H 1.09009 * 109.47177 * 240.00653 * 2 1 3 23 23 H 1.09001 * 109.47475 * 120.00434 * 2 1 3 24 24 H 1.08004 * 120.04711 * 359.96900 * 4 3 2 25 25 H 0.97003 * 119.99955 * 179.97438 * 9 8 6 26 26 H 1.08008 * 120.15996 * 180.25643 * 14 5 4 27 27 H 0.96998 * 119.99868 * 179.97438 * 16 15 14 28 28 H 1.00898 * 110.99858 * 56.05190 * 17 16 15 29 29 H 1.00908 * 110.99456 * 179.97438 * 17 16 15 30 30 H 1.07995 * 119.78886 * 0.02684 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2611 2.0667 -1.1943 5 6 2.7297 3.3938 -1.1956 6 6 2.9663 4.0636 -2.4183 7 1 2.4471 3.7536 -3.3131 8 6 3.8733 5.1280 -2.4688 9 7 4.7490 5.2873 -1.5101 10 14 3.8334 6.3215 -3.9053 11 1 2.5037 6.9800 -3.9650 12 1 4.8874 7.3515 -3.7225 13 1 4.0770 5.5824 -5.1700 14 6 2.9615 4.0493 0.0265 15 6 2.7262 3.3840 1.2157 16 7 2.9549 4.0296 2.4331 17 7 3.4103 5.3174 2.4482 18 6 2.2620 2.0703 1.2013 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 2.0811 1.5556 -2.1286 25 1 5.3780 6.0250 -1.5453 26 1 3.3172 5.0691 0.0363 27 1 2.7898 3.5637 3.2676 28 1 2.7959 5.9243 1.9266 29 1 3.5273 5.6484 3.3943 30 1 2.0804 1.5553 2.1330 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306571178.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = 31.239141 kcal Electronic energy + Delta-G solvation = -13099.268314 eV Core-core repulsion = 10894.244455 eV Total energy + Delta-G solvation = -2205.023859 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.05271 -35.73586 -34.06706 -32.12419 -29.96517 -28.03787 -26.06547 -24.91710 -22.81007 -20.52777 -19.39111 -17.47086 -16.15247 -15.74580 -14.86259 -14.33480 -14.01777 -13.76784 -13.12818 -12.59455 -12.44056 -12.00469 -11.68115 -11.36152 -11.13624 -10.80704 -10.68570 -10.47959 -10.29062 -9.84237 -9.55408 -9.33703 -9.00178 -7.93349 -7.14061 -6.60571 -5.91003 -4.21727 2.94178 3.14317 3.17343 3.25227 3.39826 4.03871 4.04491 4.77248 5.70009 5.71636 5.77638 5.84058 6.13336 6.37670 6.42775 6.48705 6.63934 6.78566 6.97998 7.12709 7.23054 7.36466 7.55044 7.64782 8.02338 8.11075 8.23599 8.34286 8.60273 8.93705 9.10556 9.11853 9.29234 10.35635 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.027022 B = 0.011675 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.929427 B = 2397.772968 C = 3285.428216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.031 4.031 4 C -0.253 4.253 5 C 0.137 3.863 6 C -0.467 4.467 7 H 0.074 0.926 8 C 0.077 3.923 9 N -0.781 5.781 10 Si 0.902 3.098 11 H -0.266 1.266 12 H -0.280 1.280 13 H -0.267 1.267 14 C -0.222 4.222 15 C 0.219 3.781 16 N -0.617 5.617 17 N -0.594 5.594 18 C -0.295 4.295 19 H 0.043 0.957 20 H 0.050 0.950 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.278 0.722 26 H 0.128 0.872 27 H 0.385 0.615 28 H 0.325 0.675 29 H 0.335 0.665 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -1.169 4.153 5.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.032 4.032 4 C -0.273 4.273 5 C 0.134 3.866 6 C -0.497 4.497 7 H 0.092 0.908 8 C -0.141 4.141 9 N -0.405 5.405 10 Si 0.727 3.273 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.192 1.192 14 C -0.246 4.246 15 C 0.120 3.880 16 N -0.344 5.344 17 N -0.216 5.216 18 C -0.319 4.319 19 H 0.062 0.938 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.145 0.855 27 H 0.221 0.779 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.991 -1.150 3.793 4.966 hybrid contribution -0.806 0.790 0.317 1.172 sum -3.797 -0.359 4.110 5.607 Atomic orbital electron populations 1.21694 0.96057 0.99989 1.01962 1.20412 0.95144 0.94989 1.00877 1.18954 0.97673 0.93514 0.93089 1.20705 1.15702 0.95994 0.94942 1.17356 0.86808 0.89738 0.92705 1.19488 1.21467 1.12967 0.95741 0.90754 1.25883 0.93865 0.97435 0.96952 1.69887 1.12229 1.27025 1.31408 0.86486 0.78725 0.80139 0.81980 1.19043 1.20485 1.19180 1.20803 1.12890 1.01535 0.89383 1.17492 0.95058 0.91060 0.84366 1.43128 1.78196 1.07359 1.05740 1.60153 1.49826 0.93672 1.17993 1.19535 1.21316 0.95192 0.95852 0.93827 0.93073 0.92713 0.92287 0.92705 0.89464 0.91072 0.85464 0.77943 0.86081 0.85423 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.89 37.16 0.37 -1.87 16 2 C -0.08 -1.41 6.05 -27.88 -0.17 -1.58 16 3 C -0.03 -0.72 5.12 -104.73 -0.54 -1.26 16 4 C -0.25 -6.45 9.43 -38.84 -0.37 -6.81 16 5 C 0.14 3.80 5.57 -106.85 -0.60 3.20 16 6 C -0.47 -12.83 9.05 -37.74 -0.34 -13.17 16 7 H 0.07 1.97 7.91 -52.49 -0.41 1.55 16 8 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 9 N -0.78 -20.96 10.95 55.55 0.61 -20.35 16 10 Si 0.90 19.22 29.59 -169.99 -5.03 14.19 16 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 14 C -0.22 -5.97 7.99 -38.68 -0.31 -6.28 16 15 C 0.22 5.28 6.69 -83.86 -0.56 4.71 16 16 N -0.62 -12.25 6.66 32.37 0.22 -12.04 16 17 N -0.59 -10.74 9.59 60.35 0.58 -10.16 16 18 C -0.30 -6.79 9.55 -39.08 -0.37 -7.16 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.06 1.04 8.08 -51.92 -0.42 0.62 16 23 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 24 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 25 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 26 H 0.13 3.51 5.12 -52.48 -0.27 3.24 16 27 H 0.39 6.49 8.84 -185.16 -1.64 4.85 16 28 H 0.32 5.89 8.42 -181.37 -1.53 4.36 16 29 H 0.33 4.58 9.21 -181.36 -1.67 2.91 16 30 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 257.11 15.07 3.87 3.87 Total: -1.00 -29.68 257.11 -10.33 -40.02 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -7.61 Total: 12.76 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -2.97 Total: -28.29 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 1.40 Total: -42.54 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.68 -10.33 -40.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306571178.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.256 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds