Wall clock time and date at job start Mon Mar 30 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46921 * 2 1 4 4 C 1.38901 * 119.70138 * 270.02256 * 3 2 1 5 5 C 1.38163 * 120.62932 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.02322 * 359.97438 * 5 4 3 7 7 N 1.38734 * 120.29250 * 180.28057 * 6 5 4 8 8 N 1.36600 * 120.00282 * 359.72270 * 7 6 5 9 9 C 1.41545 * 119.41563 * 0.02562 * 6 5 4 10 10 C 1.41037 * 120.30893 * 180.02562 * 9 6 5 11 11 H 1.08001 * 120.00330 * 333.68623 * 10 9 6 12 12 C 1.39932 * 120.00052 * 153.67919 * 10 9 6 13 13 N 1.30879 * 119.99720 * 343.98344 * 12 10 9 14 14 Si 1.86801 * 119.99966 * 163.97912 * 12 10 9 15 15 H 1.48496 * 109.47324 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46776 * 120.00477 * 14 12 10 17 17 H 1.48502 * 109.47130 * 239.99856 * 14 12 10 18 18 C 1.36443 * 119.70286 * 90.00293 * 3 2 1 19 19 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47013 * 299.99923 * 1 2 3 21 21 H 1.09004 * 109.47307 * 60.00179 * 1 2 3 22 22 H 1.09004 * 109.47013 * 240.00077 * 2 1 3 23 23 H 1.08992 * 109.47329 * 120.00211 * 2 1 3 24 24 H 1.08011 * 119.68680 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.98567 * 180.02562 * 5 4 3 26 26 H 0.97008 * 120.00119 * 179.72474 * 7 6 5 27 27 H 1.00896 * 110.99867 * 180.02562 * 8 7 6 28 28 H 1.00895 * 110.99589 * 303.95667 * 8 7 6 29 29 H 0.97003 * 119.99778 * 179.97438 * 13 12 10 30 30 H 1.08000 * 120.02435 * 0.04298 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2612 2.0699 -1.2065 5 6 2.7211 3.3725 -1.2289 6 6 2.9584 4.0455 -0.0390 7 7 3.4147 5.3556 -0.0549 8 7 3.6378 5.9867 -1.2457 9 6 2.7256 3.3855 1.1913 10 6 2.9600 4.0519 2.4120 11 1 3.6819 4.8537 2.4596 12 6 2.2570 3.6743 3.5615 13 7 1.1787 2.9399 3.4574 14 14 2.8576 4.2184 5.2446 15 1 4.0885 5.0347 5.0908 16 1 1.8053 5.0301 5.9070 17 1 3.1561 3.0231 6.0738 18 6 2.2577 2.0582 1.1852 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 2.0779 1.5513 -2.1361 25 1 2.8952 3.8673 -2.1730 26 1 3.5754 5.8234 0.7795 27 1 3.9662 6.9294 -1.0992 28 1 4.2845 5.4634 -1.8166 29 1 0.6915 2.6778 4.2542 30 1 2.0769 1.5447 2.1179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306921490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:36 Heat of formation + Delta-G solvation = 32.592898 kcal Electronic energy + Delta-G solvation = -13217.999530 eV Core-core repulsion = 11013.034374 eV Total energy + Delta-G solvation = -2204.965156 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.16847 -35.71822 -33.83492 -32.25822 -29.67034 -28.56854 -26.06941 -24.88492 -22.18808 -20.99188 -19.20919 -17.17158 -16.80266 -15.87912 -14.95567 -14.13749 -13.88717 -13.68952 -12.75035 -12.50211 -12.35070 -12.15260 -11.61845 -11.32977 -11.26977 -11.03087 -10.75681 -10.46373 -10.19671 -9.94419 -9.43849 -9.31081 -9.05763 -7.94947 -7.26504 -6.64480 -5.98615 -4.08290 2.86345 3.11948 3.15295 3.24231 3.28693 4.01019 4.20454 4.75323 5.69403 5.89361 5.90559 5.92212 6.30495 6.43400 6.53597 6.60629 6.72179 6.78856 6.99942 7.03785 7.21807 7.32691 7.49297 7.65798 7.83929 7.96097 8.29465 8.34883 8.59761 8.87169 8.94110 9.16686 9.40712 10.35706 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.014607 C = 0.009152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.858288 B = 1916.434299 C = 3058.839358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.113 4.113 4 C -0.190 4.190 5 C -0.163 4.163 6 C 0.117 3.883 7 N -0.606 5.606 8 N -0.601 5.601 9 C 0.067 3.933 10 C -0.469 4.469 11 H 0.067 0.933 12 C 0.077 3.923 13 N -0.801 5.801 14 Si 0.901 3.099 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.274 1.274 18 C -0.130 4.130 19 H 0.039 0.961 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.398 0.602 27 H 0.337 0.663 28 H 0.314 0.686 29 H 0.276 0.724 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 -0.025 -2.551 3.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.115 4.115 4 C -0.210 4.210 5 C -0.187 4.187 6 C 0.018 3.982 7 N -0.336 5.336 8 N -0.224 5.224 9 C 0.062 3.938 10 C -0.501 4.501 11 H 0.085 0.915 12 C -0.139 4.139 13 N -0.428 5.428 14 Si 0.727 3.273 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.199 1.199 18 C -0.150 4.150 19 H 0.058 0.942 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.236 0.764 27 H 0.149 0.851 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.453 -0.188 -2.703 3.075 hybrid contribution 1.282 0.681 1.352 1.984 sum 2.735 0.492 -1.351 3.090 Atomic orbital electron populations 1.21714 0.96251 0.99644 1.02197 1.20309 0.95150 0.94945 1.00240 1.19065 1.03686 0.94914 0.93802 1.20034 1.10038 0.95449 0.95487 1.19970 1.08241 0.95409 0.95070 1.17755 1.03572 0.82800 0.94086 1.42747 1.76803 1.13100 1.00909 1.60242 1.52010 1.03263 1.06871 1.17159 0.94764 0.91841 0.90077 1.19083 1.20804 1.17196 0.92980 0.91463 1.25714 0.93454 0.94011 1.00675 1.69851 1.12340 1.29779 1.30845 0.86383 0.79613 0.79136 0.82189 1.18872 1.20280 1.19930 1.20629 1.04475 0.93790 0.96143 0.94232 0.92250 0.93291 0.93236 0.92712 0.89729 0.88828 0.76421 0.85146 0.87158 0.91337 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.89 37.16 0.37 -2.19 16 2 C -0.07 -1.36 6.04 -27.88 -0.17 -1.53 16 3 C -0.11 -2.67 5.10 -105.02 -0.54 -3.21 16 4 C -0.19 -4.40 9.68 -39.36 -0.38 -4.78 16 5 C -0.16 -3.84 9.35 -39.42 -0.37 -4.21 16 6 C 0.12 2.88 6.73 -83.29 -0.56 2.32 16 7 N -0.61 -12.82 6.55 32.72 0.21 -12.60 16 8 N -0.60 -10.32 9.59 60.35 0.58 -9.74 16 9 C 0.07 1.79 5.57 -106.63 -0.59 1.19 16 10 C -0.47 -12.28 8.48 -37.89 -0.32 -12.60 16 11 H 0.07 1.67 6.73 -52.49 -0.35 1.32 16 12 C 0.08 1.95 5.16 -17.32 -0.09 1.86 16 13 N -0.80 -21.02 10.97 55.55 0.61 -20.41 16 14 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 15 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 18 C -0.13 -3.39 8.24 -39.29 -0.32 -3.71 16 19 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 20 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 23 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 24 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 25 H 0.09 2.02 7.04 -52.49 -0.37 1.65 16 26 H 0.40 8.18 7.08 -185.15 -1.31 6.87 16 27 H 0.34 4.56 9.21 -181.37 -1.67 2.89 16 28 H 0.31 5.02 8.44 -181.37 -1.53 3.49 16 29 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 30 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 LS Contribution 253.91 15.07 3.83 3.83 Total: -1.00 -28.42 253.91 -10.00 -38.42 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -7.22 Total: 13.47 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -2.97 Total: -26.85 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 1.40 Total: -42.75 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.42 -10.00 -38.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306921490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.010 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds