Wall clock time and date at job start Mon Mar 30 2020 02:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46921 * 2 1 4 4 C 1.38901 * 119.70138 * 270.02256 * 3 2 1 5 5 C 1.38163 * 120.62932 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.02322 * 359.97438 * 5 4 3 7 7 N 1.38734 * 120.29250 * 180.28057 * 6 5 4 8 8 N 1.36600 * 120.00282 * 359.72270 * 7 6 5 9 9 C 1.41545 * 119.41563 * 0.02562 * 6 5 4 10 10 C 1.41037 * 120.30893 * 180.02562 * 9 6 5 11 11 H 1.08001 * 120.00330 * 333.68623 * 10 9 6 12 12 C 1.39932 * 120.00052 * 153.67919 * 10 9 6 13 13 N 1.30879 * 119.99720 * 343.98344 * 12 10 9 14 14 Si 1.86801 * 119.99966 * 163.97912 * 12 10 9 15 15 H 1.48496 * 109.47324 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46776 * 120.00477 * 14 12 10 17 17 H 1.48502 * 109.47130 * 239.99856 * 14 12 10 18 18 C 1.36443 * 119.70286 * 90.00293 * 3 2 1 19 19 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47013 * 299.99923 * 1 2 3 21 21 H 1.09004 * 109.47307 * 60.00179 * 1 2 3 22 22 H 1.09004 * 109.47013 * 240.00077 * 2 1 3 23 23 H 1.08992 * 109.47329 * 120.00211 * 2 1 3 24 24 H 1.08011 * 119.68680 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.98567 * 180.02562 * 5 4 3 26 26 H 0.97008 * 120.00119 * 179.72474 * 7 6 5 27 27 H 1.00896 * 110.99867 * 180.02562 * 8 7 6 28 28 H 1.00895 * 110.99589 * 303.95667 * 8 7 6 29 29 H 0.97003 * 119.99778 * 179.97438 * 13 12 10 30 30 H 1.08000 * 120.02435 * 0.04298 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2612 2.0699 -1.2065 5 6 2.7211 3.3725 -1.2289 6 6 2.9584 4.0455 -0.0390 7 7 3.4147 5.3556 -0.0549 8 7 3.6378 5.9867 -1.2457 9 6 2.7256 3.3855 1.1913 10 6 2.9600 4.0519 2.4120 11 1 3.6819 4.8537 2.4596 12 6 2.2570 3.6743 3.5615 13 7 1.1787 2.9399 3.4574 14 14 2.8576 4.2184 5.2446 15 1 4.0885 5.0347 5.0908 16 1 1.8053 5.0301 5.9070 17 1 3.1561 3.0231 6.0738 18 6 2.2577 2.0582 1.1852 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 2.0779 1.5513 -2.1361 25 1 2.8952 3.8673 -2.1730 26 1 3.5754 5.8234 0.7795 27 1 3.9662 6.9294 -1.0992 28 1 4.2845 5.4634 -1.8166 29 1 0.6915 2.6778 4.2542 30 1 2.0769 1.5447 2.1179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306921490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:35 Heat of formation + Delta-G solvation = 15.520105 kcal Electronic energy + Delta-G solvation = -13218.739861 eV Core-core repulsion = 11013.034374 eV Total energy + Delta-G solvation = -2205.705488 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96223 -37.35305 -35.67249 -33.91994 -31.50404 -30.25653 -27.81096 -26.69114 -23.79486 -22.86523 -20.98054 -18.94214 -18.56809 -17.54129 -16.72043 -15.73767 -15.58588 -15.33713 -14.45522 -14.22732 -14.07650 -13.91228 -13.32979 -12.98923 -12.94663 -12.74806 -12.49079 -12.14236 -11.76447 -11.62414 -11.21765 -11.11068 -10.93026 -9.59105 -9.18412 -8.52075 -7.73402 -6.01657 1.07958 1.36462 1.39895 1.52290 1.54318 2.25403 2.63375 2.87890 3.83077 4.34725 4.36352 4.47539 4.69210 4.75580 4.90599 5.02833 5.13821 5.17987 5.25100 5.44204 5.47862 5.52312 5.79707 5.88134 6.07255 6.15471 6.42623 6.46041 6.76558 6.99233 7.07081 7.34953 7.79772 8.50110 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.014607 C = 0.009152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.858288 B = 1916.434299 C = 3058.839358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.124 4.124 4 C -0.190 4.190 5 C -0.174 4.174 6 C 0.108 3.892 7 N -0.606 5.606 8 N -0.602 5.602 9 C 0.031 3.969 10 C -0.496 4.496 11 H 0.071 0.929 12 C 0.034 3.966 13 N -0.836 5.836 14 Si 0.974 3.026 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.270 1.270 18 C -0.153 4.153 19 H 0.072 0.928 20 H 0.032 0.968 21 H 0.050 0.950 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.398 0.602 27 H 0.359 0.641 28 H 0.327 0.673 29 H 0.280 0.720 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 0.043 -3.262 4.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.125 4.125 4 C -0.209 4.209 5 C -0.198 4.198 6 C 0.008 3.992 7 N -0.334 5.334 8 N -0.228 5.228 9 C 0.025 3.975 10 C -0.527 4.527 11 H 0.089 0.911 12 C -0.179 4.179 13 N -0.464 5.464 14 Si 0.797 3.203 15 H -0.183 1.183 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.174 4.174 19 H 0.091 0.909 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.236 0.764 27 H 0.173 0.827 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.807 -0.089 -3.429 3.877 hybrid contribution 1.181 0.677 1.431 1.976 sum 2.989 0.588 -1.998 3.643 Atomic orbital electron populations 1.21642 0.95095 1.01460 1.00925 1.20351 0.96080 0.92749 1.01353 1.19451 1.03086 0.96821 0.93175 1.20409 1.08709 0.95490 0.96324 1.20270 1.08198 0.95824 0.95485 1.17925 1.03233 0.84188 0.93893 1.42688 1.76199 1.12233 1.02295 1.60086 1.53105 1.04366 1.05228 1.17530 0.96096 0.92558 0.91312 1.19333 1.21540 1.17984 0.93839 0.91100 1.26540 0.93212 0.93936 1.04204 1.69933 1.13412 1.31019 1.32038 0.85277 0.79124 0.78719 0.77212 1.18273 1.19729 1.19548 1.20623 1.06159 0.94224 0.96386 0.90874 0.94903 0.93117 0.90717 0.92925 0.87004 0.86852 0.76429 0.82655 0.85896 0.90918 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.89 71.98 0.71 -3.97 16 2 C -0.07 -2.59 6.04 29.85 0.18 -2.41 16 3 C -0.12 -5.80 5.10 -20.12 -0.10 -5.90 16 4 C -0.19 -8.47 9.68 22.41 0.22 -8.25 16 5 C -0.17 -7.96 9.35 22.37 0.21 -7.75 16 6 C 0.11 5.32 6.73 38.99 0.26 5.58 16 7 N -0.61 -25.17 6.55 -50.39 -0.33 -25.50 16 8 N -0.60 -19.48 9.59 37.02 0.35 -19.13 16 9 C 0.03 1.66 5.57 -21.17 -0.12 1.54 16 10 C -0.50 -26.49 8.48 23.37 0.20 -26.30 16 11 H 0.07 3.58 6.73 -2.91 -0.02 3.56 16 12 C 0.03 1.72 5.16 85.25 0.44 2.16 16 13 N -0.84 -45.13 10.97 21.83 0.24 -44.89 16 14 Si 0.97 39.23 29.59 68.60 2.03 41.26 16 15 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 16 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 17 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 18 C -0.15 -8.21 8.24 22.46 0.19 -8.02 16 19 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 20 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 21 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 22 H 0.07 2.45 8.08 -2.38 -0.02 2.43 16 23 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 24 H 0.11 4.32 8.06 -2.90 -0.02 4.29 16 25 H 0.11 4.62 7.04 -2.91 -0.02 4.60 16 26 H 0.40 16.23 7.08 -215.49 -1.52 14.70 16 27 H 0.36 8.91 9.21 -210.56 -1.94 6.98 16 28 H 0.33 9.68 8.44 -210.56 -1.78 7.91 16 29 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 30 H 0.10 5.50 6.22 -2.91 -0.02 5.48 16 Total: -1.00 -61.17 253.91 0.41 -60.76 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -4.07 Total: 40.80 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 2.18 Total: -53.31 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: 0.26 Total: -89.51 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -61.17 0.41 -60.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306921490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.280 kcal (2) G-P(sol) polarization free energy of solvation -61.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds