Wall clock time and date at job start Mon Mar 30 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47040 * 2 1 4 4 C 1.38521 * 119.79153 * 264.99880 * 3 2 1 5 5 C 1.37641 * 120.33098 * 180.25731 * 4 3 2 6 6 C 1.40787 * 119.88863 * 359.52035 * 5 4 3 7 7 C 1.41414 * 120.20512 * 180.25248 * 6 5 4 8 8 H 1.07994 * 120.00164 * 330.37261 * 7 6 5 9 9 C 1.39925 * 119.99824 * 150.37703 * 7 6 5 10 10 N 1.30835 * 120.00243 * 161.76084 * 9 7 6 11 11 Si 1.86795 * 120.00300 * 341.75809 * 9 7 6 12 12 H 1.48503 * 109.47297 * 95.41547 * 11 9 7 13 13 H 1.48497 * 109.47476 * 215.41668 * 11 9 7 14 14 H 1.48502 * 109.47059 * 335.41524 * 11 9 7 15 15 C 1.40566 * 119.58715 * 0.45197 * 6 5 4 16 16 C 1.38312 * 119.67550 * 359.78015 * 15 6 5 17 17 N 1.39683 * 119.95750 * 179.97438 * 16 15 6 18 18 N 1.36610 * 119.99248 * 0.02565 * 17 16 15 19 19 H 1.08996 * 109.47208 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47082 * 300.00355 * 1 2 3 21 21 H 1.09003 * 109.46940 * 59.99868 * 1 2 3 22 22 H 1.08998 * 109.47051 * 240.00414 * 2 1 3 23 23 H 1.08999 * 109.47355 * 119.99857 * 2 1 3 24 24 H 1.08006 * 119.83471 * 359.97438 * 4 3 2 25 25 H 1.08003 * 120.05804 * 179.72213 * 5 4 3 26 26 H 0.96995 * 120.00777 * 179.97438 * 10 9 7 27 27 H 1.08003 * 120.16296 * 179.79379 * 15 6 5 28 28 H 0.96996 * 120.00982 * 180.02562 * 17 16 15 29 29 H 1.00902 * 110.99654 * 180.02562 * 18 17 16 30 30 H 1.00901 * 110.99827 * 303.94674 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0348 -1.1976 5 6 2.8253 3.3302 -1.2100 6 6 2.9588 4.0394 -0.0011 7 6 3.4307 5.3724 -0.0066 8 1 4.1137 5.7003 -0.7762 9 6 3.0126 6.2666 0.9851 10 7 3.6920 7.3627 1.2063 11 14 1.4846 5.8956 1.9934 12 1 1.8782 5.2363 3.2645 13 1 0.7699 7.1622 2.2935 14 1 0.5908 4.9933 1.2238 15 6 2.6241 3.4126 1.2117 16 6 2.1633 2.1085 1.2043 17 7 1.8295 1.4798 2.4062 18 7 1.9578 2.1533 3.5878 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.2555 1.4926 -2.1258 25 1 3.0842 3.8031 -2.1459 26 1 3.4021 7.9828 1.8935 27 1 2.7261 3.9468 2.1449 28 1 1.5066 0.5652 2.4019 29 1 1.6812 1.5738 4.3661 30 1 2.8995 2.4951 3.7087 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307271502.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:59 Heat of formation + Delta-G solvation = 32.982221 kcal Electronic energy + Delta-G solvation = -13376.262409 eV Core-core repulsion = 11171.314136 eV Total energy + Delta-G solvation = -2204.948274 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.58459 -35.68090 -34.12833 -32.57032 -29.75861 -29.34920 -26.27339 -25.11420 -22.24642 -20.86685 -19.79380 -17.97406 -16.55445 -16.07067 -14.94919 -14.41195 -14.25764 -13.77589 -13.05171 -12.88863 -12.63090 -12.32164 -12.06571 -11.68053 -11.29461 -10.77123 -10.71493 -10.55134 -10.20966 -9.99774 -9.65069 -9.51692 -8.96135 -8.26546 -7.39218 -6.81955 -6.22602 -4.36869 2.76199 2.94390 3.35102 3.39806 3.53996 3.77627 4.18797 4.61842 5.50697 5.53897 5.58127 5.62923 5.96987 6.09878 6.20664 6.35699 6.39427 6.62633 6.75404 6.85563 6.95191 7.09335 7.21767 7.41366 7.69156 7.87181 7.92256 8.14867 8.38215 8.58924 8.80702 8.93944 8.99056 10.19899 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.034627 B = 0.012996 C = 0.010617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.431847 B = 2154.054449 C = 2636.528606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C -0.273 4.273 4 C -0.046 4.046 5 C -0.245 4.245 6 C 0.120 3.880 7 C -0.450 4.450 8 H 0.088 0.912 9 C 0.084 3.916 10 N -0.815 5.815 11 Si 0.919 3.081 12 H -0.262 1.262 13 H -0.301 1.301 14 H -0.247 1.247 15 C -0.291 4.291 16 C 0.253 3.747 17 N -0.612 5.612 18 N -0.603 5.603 19 H 0.039 0.961 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.283 0.717 27 H 0.109 0.891 28 H 0.391 0.609 29 H 0.340 0.660 30 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 -10.006 2.782 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.279 4.279 4 C -0.065 4.065 5 C -0.265 4.265 6 C 0.116 3.884 7 C -0.479 4.479 8 H 0.106 0.894 9 C -0.134 4.134 10 N -0.440 5.440 11 Si 0.746 3.254 12 H -0.188 1.188 13 H -0.229 1.229 14 H -0.171 1.171 15 C -0.315 4.315 16 C 0.153 3.847 17 N -0.340 5.340 18 N -0.226 5.226 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.229 0.771 29 H 0.152 0.848 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.498 -9.124 2.713 10.528 hybrid contribution 0.030 -1.014 0.943 1.385 sum -4.469 -10.137 3.656 11.666 Atomic orbital electron populations 1.21820 0.96823 0.99641 1.02087 1.19987 0.94472 0.94525 0.99991 1.18521 1.20867 0.96675 0.91833 1.20233 0.96994 0.94429 0.94890 1.20867 1.12922 0.95811 0.96903 1.17521 0.87320 0.93067 0.90461 1.19483 1.24447 0.93715 1.10206 0.89373 1.26188 0.97894 0.94145 0.95176 1.69721 1.35953 1.10331 1.27951 0.86184 0.81821 0.76577 0.80796 1.18763 1.22912 1.17078 1.20483 1.18849 0.94180 0.97950 1.17151 0.93108 0.91701 0.82710 1.43314 1.76697 1.14247 0.99763 1.60194 1.30439 1.36338 0.95649 0.94145 0.93114 0.92793 0.92695 0.93942 0.88921 0.88581 0.90708 0.87344 0.77144 0.84778 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.89 37.16 0.37 -1.80 16 2 C -0.05 -0.84 5.48 -27.88 -0.15 -1.00 16 3 C -0.27 -5.64 5.17 -104.12 -0.54 -6.17 16 4 C -0.05 -1.00 9.64 -39.70 -0.38 -1.38 16 5 C -0.24 -5.91 9.79 -38.84 -0.38 -6.29 16 6 C 0.12 3.16 5.10 -106.85 -0.55 2.62 16 7 C -0.45 -12.65 9.57 -37.74 -0.36 -13.01 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 9 C 0.08 2.30 5.40 -17.35 -0.09 2.21 16 10 N -0.82 -22.52 13.93 55.55 0.77 -21.75 16 11 Si 0.92 22.44 24.52 -169.99 -4.17 18.27 16 12 H -0.26 -6.20 6.71 56.52 0.38 -5.82 16 13 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.25 -6.39 6.86 56.52 0.39 -6.00 16 15 C -0.29 -7.24 6.47 -38.68 -0.25 -7.49 16 16 C 0.25 5.58 6.67 -83.86 -0.56 5.02 16 17 N -0.61 -11.04 6.55 32.37 0.21 -10.83 16 18 N -0.60 -9.98 9.59 60.35 0.58 -9.40 16 19 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 23 H 0.04 0.63 6.79 -51.93 -0.35 0.27 16 24 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 25 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 26 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 27 H 0.11 2.73 3.70 -52.48 -0.19 2.54 16 28 H 0.39 5.98 6.91 -185.15 -1.28 4.70 16 29 H 0.34 4.16 9.21 -181.36 -1.67 2.49 16 30 H 0.33 5.49 8.43 -181.36 -1.53 3.96 16 LS Contribution 248.44 15.07 3.74 3.74 Total: -1.00 -29.67 248.44 -8.91 -38.57 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.15 Total: 8.69 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -2.90 Total: -27.30 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 1.56 Total: -41.97 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.17 Total: 18.27 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.67 -8.91 -38.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307271502.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.554 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds