Wall clock time and date at job start Mon Mar 30 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 111.00304 * 2 1 4 4 C 1.50703 * 109.47132 * 179.97438 * 3 2 1 5 5 N 1.31879 * 119.61741 * 89.99606 * 4 3 2 6 6 C 1.31857 * 121.72569 * 179.97438 * 5 4 3 7 7 C 1.38224 * 120.76155 * 359.97438 * 6 5 4 8 8 C 1.38630 * 119.16347 * 0.02562 * 7 6 5 9 9 C 1.38181 * 119.61274 * 270.23206 * 4 3 2 10 10 C 1.50699 * 120.42260 * 0.02562 * 9 4 3 11 11 C 1.50694 * 109.47187 * 85.27256 * 10 9 4 12 12 H 1.08001 * 120.00155 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00128 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00028 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00131 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47355 * 89.99370 * 15 13 11 17 17 H 1.48496 * 109.47323 * 210.00210 * 15 13 11 18 18 H 1.48511 * 109.46847 * 329.99750 * 15 13 11 19 19 H 1.08996 * 109.47337 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.46810 * 300.00538 * 1 2 3 21 21 H 1.09000 * 109.46672 * 59.99984 * 1 2 3 22 22 H 1.00909 * 110.99489 * 123.94953 * 2 1 3 23 23 H 1.08999 * 109.47176 * 59.99513 * 3 2 1 24 24 H 1.08998 * 109.46576 * 299.99482 * 3 2 1 25 25 H 1.07997 * 119.62057 * 179.97438 * 6 5 4 26 26 H 1.07998 * 120.41893 * 179.97438 * 7 6 5 27 27 H 1.08002 * 120.78834 * 179.97438 * 8 7 6 28 28 H 1.08995 * 109.47145 * 205.27600 * 10 9 4 29 29 H 1.08999 * 109.46740 * 325.27351 * 10 9 4 30 30 H 0.97006 * 119.99817 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 3.5021 1.3311 0.0006 5 7 4.1541 1.3135 -1.1456 6 6 5.4713 1.2787 -1.1935 7 6 6.2208 1.2600 -0.0323 8 6 5.5704 1.2777 1.1919 9 6 4.1840 1.3082 1.2022 10 6 3.4309 1.3227 2.5075 11 6 3.0412 -0.0850 2.8782 12 1 3.3121 -0.9079 2.2334 13 6 2.3396 -0.3225 4.0411 14 7 1.9999 -1.5511 4.3648 15 14 1.8715 1.1006 5.1568 16 1 0.5423 1.6276 4.7558 17 1 1.8131 0.6284 6.5635 18 1 2.8872 2.1776 5.0379 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8306 -0.5261 0.7815 23 1 1.6460 1.8948 0.8899 24 1 1.6461 1.8947 -0.8900 25 1 5.9704 1.2647 -2.1512 26 1 7.2994 1.2312 -0.0780 27 1 6.1300 1.2633 2.1155 28 1 4.0653 1.7417 3.2884 29 1 2.5335 1.9324 2.4023 30 1 1.5060 -1.7182 5.1828 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379347330.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:05 Heat of formation + Delta-G solvation = 27.604419 kcal Electronic energy + Delta-G solvation = -13316.359996 eV Core-core repulsion = 11111.178524 eV Total energy + Delta-G solvation = -2205.181473 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.74899 -35.48471 -33.75866 -32.02447 -31.43666 -28.18780 -26.47884 -23.48792 -23.18757 -21.50152 -20.36038 -16.96150 -16.21427 -16.17572 -14.86511 -14.52353 -14.10615 -13.90586 -13.48062 -12.81520 -12.72047 -12.38057 -12.06974 -12.00852 -11.36294 -11.26488 -11.08633 -10.68184 -10.27276 -10.23290 -9.55250 -9.05516 -8.79511 -8.71429 -8.10843 -7.72692 -6.21218 -4.21987 1.70381 1.94508 3.17706 3.27311 3.28938 4.28585 4.32763 4.85762 5.07954 5.21227 5.37337 5.50078 5.59293 5.71546 5.88347 5.94861 6.07404 6.20472 6.28484 6.36812 6.39148 6.63552 6.74224 6.86915 7.25068 7.31464 7.53399 7.62905 8.16582 8.33671 8.61620 8.82344 9.38199 10.90325 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.028277 B = 0.012758 C = 0.010004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.952288 B = 2194.232724 C = 2798.181043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.690 5.690 3 C 0.116 3.884 4 C 0.124 3.876 5 N -0.471 5.471 6 C 0.069 3.931 7 C -0.176 4.176 8 C -0.084 4.084 9 C -0.076 4.076 10 C 0.016 3.984 11 C -0.518 4.518 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.891 5.891 15 Si 0.873 3.127 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.265 1.265 19 H 0.063 0.937 20 H 0.020 0.980 21 H 0.054 0.946 22 H 0.368 0.632 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.145 0.855 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 6.400 -5.729 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.325 5.325 3 C -0.014 4.014 4 C -0.014 4.014 5 N -0.180 5.180 6 C -0.089 4.089 7 C -0.196 4.196 8 C -0.110 4.110 9 C -0.078 4.078 10 C -0.022 4.022 11 C -0.556 4.556 12 H 0.095 0.905 13 C -0.128 4.128 14 N -0.528 5.528 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.189 1.189 19 H 0.082 0.918 20 H 0.039 0.961 21 H 0.073 0.927 22 H 0.191 0.809 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.162 0.838 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.085 6.211 -7.043 9.619 hybrid contribution 0.155 0.790 2.433 2.562 sum 2.241 7.001 -4.610 8.676 Atomic orbital electron populations 1.22076 0.88671 1.01437 0.99413 1.60567 1.06939 1.12790 1.52247 1.20642 0.88586 0.91536 1.00599 1.20885 0.96053 0.96741 0.87729 1.67373 1.09609 1.11349 1.29699 1.22473 0.89751 0.98860 0.97788 1.22013 1.00654 1.03150 0.93821 1.21465 0.94228 0.97373 0.97948 1.21087 0.94208 0.95025 0.97510 1.18829 0.94972 0.98925 0.89465 1.20834 1.36265 0.90875 1.07630 0.90474 1.24968 0.95134 0.95422 0.97252 1.69890 1.38701 1.19319 1.24894 0.86877 0.79465 0.83239 0.80419 1.20135 1.21096 1.18924 0.91798 0.96126 0.92744 0.80871 0.93239 0.90920 0.83763 0.85776 0.85321 0.95260 0.95475 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 60.07 0.64 1.23 16 2 N -0.69 -14.05 6.84 -122.42 -0.84 -14.89 16 3 C 0.12 2.26 5.57 -4.97 -0.03 2.23 16 4 C 0.12 2.54 6.29 -82.59 -0.52 2.02 16 5 N -0.47 -9.24 10.27 -9.48 -0.10 -9.33 16 6 C 0.07 1.15 11.18 -17.55 -0.20 0.95 16 7 C -0.18 -2.81 10.11 -39.44 -0.40 -3.21 16 8 C -0.08 -1.55 9.84 -39.27 -0.39 -1.94 16 9 C -0.08 -1.58 5.09 -104.48 -0.53 -2.11 16 10 C 0.02 0.36 3.70 -29.04 -0.11 0.25 16 11 C -0.52 -13.60 8.07 -34.44 -0.28 -13.88 16 12 H 0.08 2.24 7.46 -52.49 -0.39 1.85 16 13 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16 15 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 19 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 20 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.37 8.48 6.50 -39.29 -0.26 8.22 16 23 H 0.05 0.97 6.02 -51.93 -0.31 0.66 16 24 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 27 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 28 H 0.03 0.66 7.12 -51.93 -0.37 0.29 16 29 H 0.03 0.61 5.59 -51.93 -0.29 0.32 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 253.05 15.07 3.81 3.81 Total: -1.00 -28.87 253.05 -6.66 -35.53 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.75 Total: 6.64 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.90 Total: -12.51 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.16 Total: -49.16 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.87 -6.66 -35.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379347330.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.137 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds