Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99638 * 2 1 4 4 C 1.53002 * 109.46925 * 95.00324 * 3 2 1 5 5 C 1.50702 * 120.00300 * 180.02562 * 2 1 3 6 6 N 1.46500 * 109.47033 * 95.00032 * 5 2 1 7 7 C 1.36419 * 126.55062 * 264.68662 * 6 5 2 8 8 C 1.36224 * 107.18633 * 179.84709 * 7 6 5 9 9 N 1.32754 * 108.62302 * 0.42441 * 8 7 6 10 10 C 1.32980 * 109.22375 * 359.73822 * 9 8 7 11 11 C 1.40000 * 125.96206 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99868 * 180.02562 * 11 10 9 13 13 C 1.40230 * 120.00098 * 0.03450 * 11 10 9 14 14 N 1.30687 * 119.99709 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00059 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47153 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46635 * 120.00285 * 15 13 11 18 18 H 1.48494 * 109.47263 * 240.00202 * 15 13 11 19 19 H 1.08001 * 119.99401 * 179.97438 * 1 2 3 20 20 H 1.07995 * 120.00336 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 214.99558 * 3 2 1 22 22 H 1.09000 * 109.47161 * 335.00188 * 3 2 1 23 23 H 1.08992 * 109.47060 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.46930 * 299.99901 * 4 3 2 25 25 H 1.09004 * 109.47059 * 59.99503 * 4 3 2 26 26 H 1.09004 * 109.46743 * 214.99809 * 5 2 1 27 27 H 1.08994 * 109.46958 * 334.99910 * 5 2 1 28 28 H 1.07995 * 126.40650 * 0.02562 * 7 6 5 29 29 H 1.08001 * 125.68522 * 180.13565 * 8 7 6 30 30 H 0.97005 * 119.99290 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.4274 1.6840 1.4370 5 6 2.0636 -1.3051 -0.0006 6 7 2.4120 -1.6671 -1.3767 7 6 1.7092 -2.4958 -2.2015 8 6 2.3824 -2.5519 -3.3845 9 7 3.4675 -1.7928 -3.2912 10 6 3.5134 -1.2414 -2.0820 11 6 4.5094 -0.3786 -1.6092 12 1 4.4510 0.0149 -0.6050 13 6 5.5828 -0.0249 -2.4395 14 7 5.6531 -0.5004 -3.6547 15 14 6.9113 1.1270 -1.8088 16 1 6.6011 1.5225 -0.4115 17 1 8.2249 0.4355 -1.8472 18 1 6.9642 2.3381 -2.6664 19 1 -0.5399 -0.9354 -0.0004 20 1 -0.5400 0.9352 0.0004 21 1 2.9742 1.1990 -0.5894 22 1 1.4385 2.0855 -0.4343 23 1 2.9727 2.6277 1.4370 24 1 1.5166 1.7901 2.0265 25 1 3.0523 0.9036 1.8713 26 1 2.9743 -1.1990 0.5889 27 1 1.4387 -2.0856 0.4334 28 1 0.7894 -3.0088 -1.9625 29 1 2.0854 -3.1228 -4.2519 30 1 6.3954 -0.2555 -4.2291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388605403.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = 65.782080 kcal Electronic energy + Delta-G solvation = -13425.144662 eV Core-core repulsion = 11221.618697 eV Total energy + Delta-G solvation = -2203.525965 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85115 -36.22262 -33.30888 -31.82165 -29.78175 -28.54055 -25.67119 -24.64559 -23.12735 -19.80041 -19.44795 -18.14029 -16.44943 -15.60444 -14.92538 -14.54898 -14.31174 -13.20936 -13.03872 -12.72388 -12.47907 -12.16336 -11.77554 -11.74518 -11.34065 -11.16215 -10.97670 -10.68801 -10.41994 -10.21480 -9.91532 -9.17322 -8.83348 -7.87988 -7.68984 -6.98170 -6.34747 -4.21527 2.52949 3.06059 3.17813 3.20782 3.74002 4.05635 4.60128 4.78555 5.14153 5.25333 5.60338 5.69801 5.74913 5.78738 5.94050 6.08294 6.14467 6.34622 6.37950 6.43939 6.62857 6.68974 6.96148 7.20905 7.26535 7.35319 7.68589 8.15865 8.29085 8.64822 9.02643 9.39893 10.32312 10.58939 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.015070 C = 0.009947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.555923 B = 1857.585320 C = 2814.325276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.106 4.106 4 C -0.140 4.140 5 C 0.160 3.840 6 N -0.501 5.501 7 C -0.176 4.176 8 C -0.018 4.018 9 N -0.519 5.519 10 C 0.377 3.623 11 C -0.461 4.461 12 H 0.080 0.920 13 C 0.082 3.918 14 N -0.743 5.743 15 Si 0.903 3.097 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.275 1.275 19 H 0.091 0.909 20 H 0.093 0.907 21 H 0.101 0.899 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 2.897 7.802 9.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.116 4.116 3 C -0.143 4.143 4 C -0.198 4.198 5 C 0.036 3.964 6 N -0.191 5.191 7 C -0.306 4.306 8 C -0.170 4.170 9 N -0.240 5.240 10 C 0.134 3.866 11 C -0.501 4.501 12 H 0.098 0.902 13 C -0.141 4.141 14 N -0.368 5.368 15 Si 0.728 3.272 16 H -0.186 1.186 17 H -0.201 1.201 18 H -0.201 1.201 19 H 0.110 0.890 20 H 0.111 0.889 21 H 0.120 0.880 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.936 2.973 7.072 8.623 hybrid contribution -0.268 0.288 0.842 0.930 sum -4.204 3.261 7.915 9.537 Atomic orbital electron populations 1.23564 0.95209 1.01133 1.03487 1.22146 0.95346 0.96339 0.97761 1.20853 1.02239 0.93567 0.97661 1.21677 1.00739 1.01095 0.96246 1.20249 0.99234 0.93050 0.83868 1.45390 1.22294 1.40436 1.10947 1.21802 1.03429 1.10210 0.95111 1.22111 0.95882 1.03154 0.95885 1.71281 1.19588 1.16157 1.16939 1.20286 0.85850 0.94655 0.85837 1.18131 1.04899 1.26720 1.00330 0.90174 1.25682 0.98157 0.95879 0.94385 1.70034 1.27162 1.33813 1.05772 0.86350 0.80782 0.80229 0.79834 1.18639 1.20075 1.20063 0.89031 0.88861 0.88045 0.92208 0.92772 0.93427 0.92657 0.90051 0.91129 0.85049 0.85057 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.07 13.88 29.01 0.40 -2.66 16 2 C -0.11 -2.02 4.89 -101.06 -0.49 -2.52 16 3 C -0.11 -1.82 6.10 -27.88 -0.17 -1.99 16 4 C -0.14 -1.97 9.89 37.16 0.37 -1.60 16 5 C 0.16 3.09 6.01 -5.19 -0.03 3.06 16 6 N -0.50 -12.09 2.79 -117.26 -0.33 -12.42 16 7 C -0.18 -4.19 11.60 -16.24 -0.19 -4.37 16 8 C -0.02 -0.46 11.85 -17.88 -0.21 -0.67 16 9 N -0.52 -15.42 9.40 -12.72 -0.12 -15.54 16 10 C 0.38 10.54 7.43 -155.60 -1.16 9.38 16 11 C -0.46 -12.37 7.73 -38.17 -0.30 -12.66 16 12 H 0.08 1.97 6.05 -52.48 -0.32 1.66 16 13 C 0.08 2.17 5.50 -17.29 -0.10 2.07 16 14 N -0.74 -20.99 11.90 55.56 0.66 -20.33 16 15 Si 0.90 19.13 29.56 -169.99 -5.03 14.11 16 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H 0.09 1.35 7.99 -52.49 -0.42 0.93 16 20 H 0.09 1.31 7.99 -52.49 -0.42 0.89 16 21 H 0.10 2.07 5.31 -51.93 -0.28 1.79 16 22 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.54 7.60 -51.93 -0.39 1.15 16 27 H 0.07 1.19 7.98 -51.93 -0.41 0.78 16 28 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 29 H 0.13 3.03 8.06 -52.49 -0.42 2.61 16 30 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -31.21 259.61 -6.67 -37.88 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.90 Total: 4.35 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -1.87 Total: -11.97 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.21 Total: -48.29 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.21 -6.67 -37.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388605403.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.666 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds