Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99638 * 2 1 4 4 C 1.53002 * 109.46925 * 95.00324 * 3 2 1 5 5 C 1.50702 * 120.00300 * 180.02562 * 2 1 3 6 6 N 1.46500 * 109.47033 * 95.00032 * 5 2 1 7 7 C 1.36419 * 126.55062 * 264.68662 * 6 5 2 8 8 C 1.36224 * 107.18633 * 179.84709 * 7 6 5 9 9 N 1.32754 * 108.62302 * 0.42441 * 8 7 6 10 10 C 1.32980 * 109.22375 * 359.73822 * 9 8 7 11 11 C 1.40000 * 125.96206 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99868 * 180.02562 * 11 10 9 13 13 C 1.40230 * 120.00098 * 0.03450 * 11 10 9 14 14 N 1.30687 * 119.99709 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00059 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47153 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46635 * 120.00285 * 15 13 11 18 18 H 1.48494 * 109.47263 * 240.00202 * 15 13 11 19 19 H 1.08001 * 119.99401 * 179.97438 * 1 2 3 20 20 H 1.07995 * 120.00336 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 214.99558 * 3 2 1 22 22 H 1.09000 * 109.47161 * 335.00188 * 3 2 1 23 23 H 1.08992 * 109.47060 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.46930 * 299.99901 * 4 3 2 25 25 H 1.09004 * 109.47059 * 59.99503 * 4 3 2 26 26 H 1.09004 * 109.46743 * 214.99809 * 5 2 1 27 27 H 1.08994 * 109.46958 * 334.99910 * 5 2 1 28 28 H 1.07995 * 126.40650 * 0.02562 * 7 6 5 29 29 H 1.08001 * 125.68522 * 180.13565 * 8 7 6 30 30 H 0.97005 * 119.99290 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.4274 1.6840 1.4370 5 6 2.0636 -1.3051 -0.0006 6 7 2.4120 -1.6671 -1.3767 7 6 1.7092 -2.4958 -2.2015 8 6 2.3824 -2.5519 -3.3845 9 7 3.4675 -1.7928 -3.2912 10 6 3.5134 -1.2414 -2.0820 11 6 4.5094 -0.3786 -1.6092 12 1 4.4510 0.0149 -0.6050 13 6 5.5828 -0.0249 -2.4395 14 7 5.6531 -0.5004 -3.6547 15 14 6.9113 1.1270 -1.8088 16 1 6.6011 1.5225 -0.4115 17 1 8.2249 0.4355 -1.8472 18 1 6.9642 2.3381 -2.6664 19 1 -0.5399 -0.9354 -0.0004 20 1 -0.5400 0.9352 0.0004 21 1 2.9742 1.1990 -0.5894 22 1 1.4385 2.0855 -0.4343 23 1 2.9727 2.6277 1.4370 24 1 1.5166 1.7901 2.0265 25 1 3.0523 0.9036 1.8713 26 1 2.9743 -1.1990 0.5889 27 1 1.4387 -2.0856 0.4334 28 1 0.7894 -3.0088 -1.9625 29 1 2.0854 -3.1228 -4.2519 30 1 6.3954 -0.2555 -4.2291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388605403.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = 47.844591 kcal Electronic energy + Delta-G solvation = -13425.922490 eV Core-core repulsion = 11221.618697 eV Total energy + Delta-G solvation = -2204.303793 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.76388 -37.62003 -35.26454 -33.49696 -31.16675 -30.48898 -27.36987 -26.52492 -24.35247 -21.77844 -21.29066 -19.65672 -18.24788 -17.47390 -16.37049 -16.30052 -15.67389 -14.85033 -14.66166 -14.39485 -14.10274 -13.77597 -13.35369 -13.13777 -12.92077 -12.81812 -12.55984 -12.37379 -11.84540 -11.75342 -11.50379 -11.07321 -10.17339 -9.80731 -9.68484 -8.97868 -8.29369 -6.23139 1.19193 1.37788 1.44042 1.59223 1.87233 2.28548 2.80053 2.87232 3.65202 3.82652 3.96505 4.30458 4.45411 4.52791 4.57726 4.65049 4.76101 4.79828 4.95574 5.16233 5.20426 5.25892 5.39397 5.44847 5.68516 5.74540 5.94891 6.22871 6.34861 6.72393 7.05765 7.44777 8.34509 8.67518 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.015070 C = 0.009947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.555923 B = 1857.585320 C = 2814.325276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.142 4.142 3 C -0.105 4.105 4 C -0.134 4.134 5 C 0.155 3.845 6 N -0.500 5.500 7 C -0.151 4.151 8 C -0.061 4.061 9 N -0.569 5.569 10 C 0.344 3.656 11 C -0.479 4.479 12 H 0.093 0.907 13 C 0.031 3.969 14 N -0.795 5.795 15 Si 0.983 3.017 16 H -0.247 1.247 17 H -0.272 1.272 18 H -0.271 1.271 19 H 0.105 0.895 20 H 0.112 0.888 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.173 0.827 29 H 0.148 0.852 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 3.641 9.799 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.143 4.143 4 C -0.191 4.191 5 C 0.032 3.968 6 N -0.188 5.188 7 C -0.282 4.282 8 C -0.212 4.212 9 N -0.291 5.291 10 C 0.099 3.901 11 C -0.518 4.518 12 H 0.111 0.889 13 C -0.188 4.188 14 N -0.422 5.422 15 Si 0.804 3.196 16 H -0.169 1.169 17 H -0.197 1.197 18 H -0.196 1.196 19 H 0.123 0.877 20 H 0.130 0.870 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.190 0.810 29 H 0.165 0.835 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.082 3.711 9.106 11.069 hybrid contribution -0.105 -0.021 0.248 0.270 sum -5.187 3.690 9.354 11.315 Atomic orbital electron populations 1.23831 0.94447 1.02711 0.99999 1.22047 0.96035 0.95477 1.00767 1.20789 1.00602 0.93857 0.99011 1.21638 1.01711 1.01308 0.94440 1.20541 0.99977 0.95017 0.81245 1.45661 1.21164 1.39500 1.12519 1.22395 1.03533 1.08288 0.93995 1.22556 0.96227 1.04486 0.97940 1.71159 1.21590 1.17614 1.18728 1.20593 0.87485 0.95688 0.86303 1.18513 1.05265 1.26963 1.01073 0.88938 1.26733 1.00461 0.97280 0.94287 1.70187 1.28457 1.36007 1.07525 0.85151 0.77076 0.77582 0.79825 1.16944 1.19670 1.19636 0.87699 0.86992 0.91788 0.91733 0.91916 0.91477 0.92989 0.90419 0.88399 0.81021 0.83450 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 13.88 67.78 0.94 -3.79 16 2 C -0.14 -4.67 4.89 -16.49 -0.08 -4.76 16 3 C -0.11 -3.46 6.10 29.85 0.18 -3.28 16 4 C -0.13 -3.44 9.89 71.98 0.71 -2.73 16 5 C 0.15 5.66 6.01 85.63 0.51 6.17 16 6 N -0.50 -23.74 2.79 -524.89 -1.47 -25.20 16 7 C -0.15 -6.97 11.60 83.51 0.97 -6.00 16 8 C -0.06 -3.22 11.85 84.08 1.00 -2.22 16 9 N -0.57 -34.79 9.40 -194.17 -1.83 -36.62 16 10 C 0.34 19.61 7.43 133.59 0.99 20.60 16 11 C -0.48 -26.14 7.73 23.18 0.18 -25.96 16 12 H 0.09 4.61 6.05 -2.91 -0.02 4.59 16 13 C 0.03 1.66 5.50 85.35 0.47 2.13 16 14 N -0.80 -46.56 11.90 21.88 0.26 -46.30 16 15 Si 0.98 39.71 29.56 68.60 2.03 41.73 16 16 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 17 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 19 H 0.10 2.61 7.99 -2.91 -0.02 2.59 16 20 H 0.11 2.68 7.99 -2.91 -0.02 2.65 16 21 H 0.06 2.60 5.31 -2.39 -0.01 2.59 16 22 H 0.06 1.99 7.99 -2.39 -0.02 1.97 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 2.86 7.60 -2.39 -0.02 2.85 16 27 H 0.10 2.99 7.98 -2.39 -0.02 2.97 16 28 H 0.17 6.36 8.06 -2.91 -0.02 6.34 16 29 H 0.15 6.89 8.06 -2.91 -0.02 6.87 16 30 H 0.27 14.59 8.29 -92.70 -0.77 13.82 16 Total: -1.00 -69.16 259.61 5.99 -63.17 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 1.11 Total: 23.07 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 5.88 Total: -19.85 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -3.03 Total: -108.12 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -69.16 5.99 -63.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388605403.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.014 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds