Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.36891 * 126.39478 * 60.02770 * 12 2 1 14 14 C 1.34674 * 106.81449 * 180.02562 * 13 12 2 15 15 N 1.34120 * 108.02206 * 359.97438 * 14 13 12 16 16 C 1.30503 * 109.25823 * 359.72846 * 15 14 13 17 17 C 1.50706 * 125.65272 * 180.29121 * 16 15 14 18 18 C 1.52999 * 117.49570 * 8.92275 * 17 16 15 19 19 C 1.52993 * 117.49756 * 300.26020 * 17 16 15 20 20 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 21 21 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 24 24 H 1.07998 * 126.58944 * 0.03210 * 13 12 2 25 25 H 1.07995 * 125.98376 * 180.02562 * 14 13 12 26 26 H 1.08996 * 115.54686 * 154.58982 * 17 16 15 27 27 H 1.08998 * 117.50296 * 359.97438 * 18 17 16 28 28 H 1.08999 * 117.49684 * 145.02282 * 18 17 16 29 29 H 1.09001 * 117.50237 * 214.97615 * 19 17 16 30 30 H 1.09000 * 117.50081 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 1.7702 -1.9919 1.5409 14 6 2.4053 -2.2137 2.7076 15 7 3.0248 -1.0791 3.0651 16 6 2.8026 -0.1643 2.1614 17 6 3.3301 1.2471 2.1920 18 6 4.3667 1.5907 3.2636 19 6 2.9363 2.1228 3.3832 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 1.9111 -0.5221 -4.4375 24 1 1.1788 -2.7038 0.9843 25 1 2.4147 -3.1427 3.2583 26 1 3.4296 1.7329 1.2213 27 1 4.6667 0.7961 3.9467 28 1 5.1479 2.3029 2.9981 29 1 2.7772 3.1848 3.1964 30 1 2.2953 1.6782 4.1445 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704263905.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = 67.983007 kcal Electronic energy + Delta-G solvation = -13406.993907 eV Core-core repulsion = 11203.563382 eV Total energy + Delta-G solvation = -2203.430526 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.91636 -37.81889 -36.86970 -34.19301 -31.22298 -30.16891 -27.35043 -24.53503 -23.88938 -23.21488 -21.72899 -19.99942 -18.83847 -18.27334 -16.78174 -16.37873 -15.60783 -15.29460 -15.13894 -14.66578 -14.49346 -14.23514 -13.59740 -13.25494 -12.94653 -12.79220 -12.32910 -12.19253 -11.65235 -11.63616 -11.58168 -11.36785 -10.95834 -10.81019 -10.30446 -9.06578 -8.44675 -6.56403 1.25635 1.27765 1.31964 1.42388 2.13952 2.18815 2.20292 2.88345 3.07812 3.51769 3.84597 3.96922 4.14083 4.23365 4.33726 4.33987 4.52327 4.65266 4.73885 4.80527 4.84108 4.97191 5.11949 5.18440 5.27642 5.34893 5.71695 5.96496 6.00068 6.45618 6.54401 7.09509 7.26648 8.71623 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.034355 B = 0.011479 C = 0.010003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.821120 B = 2438.671955 C = 2798.554915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.230 3.770 3 H 0.064 0.936 4 C -0.545 4.545 5 H 0.032 0.968 6 C 0.026 3.974 7 N -0.935 5.935 8 Si 0.948 3.052 9 H -0.257 1.257 10 H -0.238 1.238 11 H -0.291 1.291 12 N -0.428 5.428 13 C -0.054 4.054 14 C -0.056 4.056 15 N -0.520 5.520 16 C 0.211 3.789 17 C -0.114 4.114 18 C -0.140 4.140 19 C -0.142 4.142 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.273 0.727 24 H 0.171 0.829 25 H 0.190 0.810 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 6.676 10.139 12.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.127 3.873 3 H 0.082 0.918 4 C -0.583 4.583 5 H 0.050 0.950 6 C -0.174 4.174 7 N -0.572 5.572 8 Si 0.773 3.227 9 H -0.182 1.182 10 H -0.162 1.162 11 H -0.218 1.218 12 N -0.107 5.107 13 C -0.190 4.190 14 C -0.204 4.204 15 N -0.240 5.240 16 C -0.050 4.050 17 C -0.134 4.134 18 C -0.178 4.178 19 C -0.180 4.180 20 H 0.079 0.921 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.189 0.811 25 H 0.207 0.793 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.006 6.834 10.502 12.690 hybrid contribution -0.768 -0.347 -1.612 1.819 sum -2.774 6.487 8.890 11.350 Atomic orbital electron populations 1.22353 0.95318 1.02541 1.01123 1.19491 0.92944 0.93652 0.81166 0.91836 1.21158 1.33175 1.13670 0.90272 0.94996 1.25777 0.96794 1.00152 0.94657 1.70010 1.46136 1.42168 0.98934 0.85872 0.79228 0.79214 0.78428 1.18243 1.16186 1.21822 1.45599 1.36152 1.10536 1.18401 1.22833 1.08511 0.87448 1.00183 1.22562 1.02401 0.98381 0.97043 1.70026 1.25139 1.00713 1.28102 1.22613 0.97717 0.97002 0.87707 1.20246 1.08038 0.88111 0.96990 1.23003 0.92710 1.02994 0.99093 1.23081 0.98217 0.99507 0.97222 0.92067 0.91627 0.92302 0.91759 0.81139 0.79319 0.86634 0.88770 0.85942 0.85616 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.06 8.73 71.99 0.63 -5.43 16 2 C 0.23 10.31 2.51 44.25 0.11 10.43 16 3 H 0.06 2.77 5.81 -2.39 -0.01 2.76 16 4 C -0.54 -29.92 9.10 25.60 0.23 -29.69 16 5 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 6 C 0.03 1.44 5.45 84.65 0.46 1.90 16 7 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 8 Si 0.95 40.38 24.37 68.60 1.67 42.06 16 9 H -0.26 -10.26 6.88 99.48 0.68 -9.58 16 10 H -0.24 -9.08 6.52 99.48 0.65 -8.43 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 N -0.43 -18.61 2.60 -495.77 -1.29 -19.90 16 13 C -0.05 -2.23 10.68 83.09 0.89 -1.34 16 14 C -0.06 -2.13 11.87 83.53 0.99 -1.14 16 15 N -0.52 -21.23 10.81 -188.13 -2.03 -23.26 16 16 C 0.21 8.62 7.44 138.13 1.03 9.65 16 17 C -0.11 -3.76 5.76 -11.54 -0.07 -3.83 16 18 C -0.14 -3.68 10.14 30.62 0.31 -3.37 16 19 C -0.14 -3.56 10.24 30.62 0.31 -3.25 16 20 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 21 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.06 2.27 3.28 -2.39 -0.01 2.26 16 23 H 0.27 15.09 8.31 -92.71 -0.77 14.31 16 24 H 0.17 6.54 8.06 -2.91 -0.02 6.52 16 25 H 0.19 5.79 8.06 -2.91 -0.02 5.76 16 26 H 0.12 3.83 7.26 -2.39 -0.02 3.81 16 27 H 0.09 2.71 7.88 -2.39 -0.02 2.70 16 28 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -65.02 251.31 4.59 -60.42 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 1.04 Total: 22.14 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.90 Total: -26.07 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -3.02 Total: -98.55 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.67 Total: 42.06 kcal Total: -65.02 4.59 -60.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704263905.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.407 kcal (2) G-P(sol) polarization free energy of solvation -65.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds