Wall clock time and date at job start Mon Mar 30 2020 02:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 N 1.45396 * 111.00045 * 2 1 4 4 C 1.46897 * 111.00157 * 123.95745 * 2 1 3 5 5 C 1.50708 * 109.47393 * 171.04762 * 4 2 1 6 6 C 1.38642 * 119.74304 * 269.72500 * 5 4 2 7 7 C 1.37618 * 120.24250 * 179.71753 * 6 5 4 8 8 C 1.40717 * 119.74358 * 0.57135 * 7 6 5 9 9 C 1.41397 * 120.24101 * 179.68070 * 8 7 6 10 10 H 1.07999 * 120.00145 * 204.40604 * 9 8 7 11 11 C 1.39945 * 120.00164 * 24.39929 * 9 8 7 12 12 N 1.30825 * 120.00027 * 17.86270 * 11 9 8 13 13 Si 1.86803 * 120.00291 * 197.85737 * 11 9 8 14 14 H 1.48506 * 109.46874 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47249 * 119.99942 * 13 11 9 16 16 H 1.48502 * 109.47052 * 240.00405 * 13 11 9 17 17 C 1.40712 * 119.51341 * 359.70531 * 8 7 6 18 18 C 1.37618 * 119.74422 * 359.97438 * 17 8 7 19 19 H 1.09002 * 109.47206 * 59.99880 * 1 2 3 20 20 H 1.09008 * 109.47204 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46839 * 300.00156 * 1 2 3 22 22 H 1.00905 * 111.00122 * 303.95436 * 3 2 1 23 23 H 1.00900 * 111.00368 * 67.90932 * 3 2 1 24 24 H 1.09003 * 109.47080 * 291.04561 * 4 2 1 25 25 H 1.08995 * 109.47763 * 51.04125 * 4 2 1 26 26 H 1.07997 * 119.87582 * 359.97438 * 6 5 4 27 27 H 1.07999 * 120.12816 * 180.27553 * 7 6 5 28 28 H 0.96998 * 120.00345 * 179.97438 * 12 11 9 29 29 H 1.08004 * 120.12521 * 179.97438 * 17 8 7 30 30 H 1.08004 * 119.87224 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 7 1.9900 1.3574 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4858 -0.9304 0.9858 6 6 3.9913 -2.0322 0.3130 7 6 5.3502 -2.1896 0.1635 8 6 6.2278 -1.2332 0.7069 9 6 7.6261 -1.3880 0.5653 10 1 8.2955 -0.9215 1.2729 11 6 8.1428 -2.1458 -0.4917 12 7 7.3941 -2.4160 -1.5300 13 14 9.9014 -2.7716 -0.4202 14 1 10.5315 -2.3332 0.8512 15 1 9.9021 -4.2550 -0.4866 16 1 10.6686 -2.2242 -1.5678 17 6 5.7035 -0.1220 1.3928 18 6 4.3409 0.0184 1.5245 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.6284 1.8836 -0.7814 23 1 1.7889 1.8220 0.8728 24 1 1.7811 -0.2338 2.0643 25 1 1.5225 -1.7477 1.1647 26 1 3.3160 -2.7675 -0.0988 27 1 5.7418 -3.0463 -0.3648 28 1 7.7523 -2.9409 -2.2628 29 1 6.3681 0.6178 1.8142 30 1 3.9363 0.8707 2.0501 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704714456.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:49 Heat of formation + Delta-G solvation = 44.776183 kcal Electronic energy + Delta-G solvation = -12937.744532 eV Core-core repulsion = 10733.307683 eV Total energy + Delta-G solvation = -2204.436849 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.82343 -36.29147 -33.55816 -30.62878 -29.15025 -29.03622 -27.11194 -24.29315 -21.98985 -20.80908 -19.69203 -17.15636 -15.89508 -15.59451 -15.15633 -14.51152 -13.99880 -13.47727 -13.30537 -13.02703 -12.37112 -12.13414 -11.77639 -11.56267 -11.40028 -10.96312 -10.80318 -10.38395 -10.28428 -9.46817 -9.23647 -9.00515 -8.92841 -8.07895 -7.26378 -7.11332 -6.62753 -4.20752 2.84940 3.14134 3.19661 3.25428 3.27221 3.97040 4.02887 4.71616 5.07942 5.33938 5.47978 5.80002 5.84250 5.88376 5.98325 6.28229 6.52615 6.56608 7.05654 7.12400 7.20466 7.45646 7.54190 7.60149 7.78055 7.91321 8.06671 8.20537 8.32239 8.46055 8.79751 9.04234 9.14012 10.31642 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.067042 B = 0.007359 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.546156 B = 3804.186147 C = 3939.565435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.350 5.350 3 N -0.653 5.653 4 C 0.118 3.882 5 C -0.192 4.192 6 C -0.084 4.084 7 C -0.169 4.169 8 C 0.112 3.888 9 C -0.465 4.465 10 H 0.075 0.925 11 C 0.076 3.924 12 N -0.793 5.793 13 Si 0.905 3.095 14 H -0.261 1.261 15 H -0.273 1.273 16 H -0.276 1.276 17 C -0.229 4.229 18 C -0.062 4.062 19 H 0.064 0.936 20 H 0.073 0.927 21 H 0.019 0.981 22 H 0.344 0.656 23 H 0.305 0.695 24 H 0.025 0.975 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.278 0.722 29 H 0.088 0.912 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 2.178 2.358 8.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 N -0.166 5.166 3 N -0.275 5.275 4 C -0.009 4.009 5 C -0.194 4.194 6 C -0.103 4.103 7 C -0.188 4.188 8 C 0.109 3.891 9 C -0.495 4.495 10 H 0.094 0.906 11 C -0.141 4.141 12 N -0.419 5.419 13 Si 0.729 3.271 14 H -0.185 1.185 15 H -0.198 1.198 16 H -0.201 1.201 17 C -0.249 4.249 18 C -0.081 4.081 19 H 0.083 0.917 20 H 0.092 0.908 21 H 0.037 0.963 22 H 0.156 0.844 23 H 0.118 0.882 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.009 1.484 1.611 7.344 hybrid contribution -0.670 0.528 0.666 1.082 sum -7.679 2.013 2.277 8.259 Atomic orbital electron populations 1.23244 0.91707 1.02667 0.99880 1.66337 1.03348 1.03646 1.43267 1.62806 1.60095 0.98385 1.06174 1.20911 0.95171 0.95801 0.89031 1.18620 0.91229 0.99478 1.10030 1.20464 0.95163 0.96533 0.98134 1.21249 0.91666 1.00659 1.05229 1.17602 0.93314 0.89331 0.88828 1.19595 0.92283 1.27781 1.09835 0.90649 1.25888 0.99771 0.94224 0.94251 1.69862 1.37771 1.29500 1.04758 0.86330 0.82397 0.79119 0.79228 1.18507 1.19827 1.20117 1.20906 0.93784 0.99702 1.10496 1.20193 0.93311 0.95919 0.98631 0.91674 0.90848 0.96258 0.84364 0.88246 0.95683 0.91074 0.89820 0.86675 0.91124 0.89411 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.32 9.96 60.06 0.60 0.28 16 2 N -0.35 -5.95 5.58 -122.42 -0.68 -6.64 16 3 N -0.65 -10.49 9.00 60.35 0.54 -9.95 16 4 C 0.12 2.14 5.26 -4.97 -0.03 2.11 16 5 C -0.19 -4.34 5.18 -104.33 -0.54 -4.88 16 6 C -0.08 -2.05 9.67 -39.66 -0.38 -2.44 16 7 C -0.17 -4.57 8.70 -38.87 -0.34 -4.91 16 8 C 0.11 3.11 5.58 -106.82 -0.60 2.51 16 9 C -0.46 -12.82 9.05 -37.74 -0.34 -13.17 16 10 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 11 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 12 N -0.79 -21.35 10.95 55.55 0.61 -20.74 16 13 Si 0.90 19.24 29.60 -169.99 -5.03 14.21 16 14 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 17 C -0.23 -5.90 9.80 -38.87 -0.38 -6.28 16 18 C -0.06 -1.44 9.22 -39.67 -0.37 -1.80 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 20 H 0.07 0.88 8.06 -51.92 -0.42 0.46 16 21 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.34 4.69 9.10 -174.65 -1.59 3.10 16 23 H 0.31 4.30 9.10 -174.66 -1.59 2.71 16 24 H 0.02 0.42 8.07 -51.93 -0.42 0.01 16 25 H 0.07 1.20 7.97 -51.93 -0.41 0.78 16 26 H 0.08 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.12 3.22 6.16 -52.49 -0.32 2.89 16 28 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 29 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 30 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 259.14 15.07 3.91 3.91 Total: -1.00 -29.56 259.14 -9.54 -39.10 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.42 Total: 6.79 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.46 Total: -26.68 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.47 Total: -37.33 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.56 -9.54 -39.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704714456.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.877 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds