Wall clock time and date at job start Mon Mar 30 2020 02:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48507 * 109.46931 * 269.99712 * 3 2 1 5 5 H 1.48498 * 109.47461 * 29.99682 * 3 2 1 6 6 H 1.48500 * 109.47116 * 150.00130 * 3 2 1 7 7 C 1.38653 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00212 * 0.02562 * 7 2 1 9 9 O 1.34833 * 120.00058 * 179.97438 * 7 2 1 10 10 C 1.35760 * 116.99906 * 185.05437 * 9 7 2 11 11 C 1.38996 * 120.00224 * 354.48372 * 10 9 7 12 12 C 1.38195 * 120.22660 * 179.97438 * 11 10 9 13 13 C 1.38046 * 120.22173 * 359.67527 * 12 11 10 14 14 C 1.39600 * 119.98698 * 0.59610 * 13 12 11 15 15 C 1.47858 * 120.10759 * 179.69748 * 14 13 12 16 16 N 1.34777 * 120.00430 * 359.73095 * 15 14 13 17 17 O 1.21552 * 120.00078 * 179.73110 * 15 14 13 18 18 C 1.38605 * 119.99713 * 174.45511 * 10 9 7 19 19 H 0.97002 * 119.99865 * 0.02562 * 1 2 3 20 20 H 1.07999 * 119.88583 * 359.97438 * 11 10 9 21 21 H 1.08000 * 119.88796 * 179.97438 * 12 11 10 22 22 H 1.07997 * 120.00245 * 180.30371 * 13 12 11 23 23 H 0.97009 * 119.99203 * 359.97438 * 16 15 14 24 24 H 0.96995 * 120.00300 * 179.73052 * 16 15 14 25 25 H 1.07997 * 120.10542 * 0.04946 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4002 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4059 -0.1060 11 6 3.2213 -3.5747 -0.0921 12 6 3.8437 -4.8038 -0.2003 13 6 5.2161 -4.8787 -0.3295 14 6 5.9808 -3.7109 -0.3387 15 6 7.4515 -3.7884 -0.4703 16 7 8.0564 -4.9881 -0.5761 17 8 8.1150 -2.7700 -0.4831 18 6 5.3525 -2.4706 -0.2286 19 1 -0.4850 0.8401 -0.0004 20 1 2.1468 -3.5222 0.0035 21 1 3.2541 -5.7086 -0.1885 22 1 5.6984 -5.8409 -0.4187 23 1 7.5268 -5.8008 -0.5655 24 1 9.0208 -5.0387 -0.6663 25 1 5.9385 -1.5635 -0.2392 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001611426.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:56 Heat of formation + Delta-G solvation = -66.194135 kcal Electronic energy + Delta-G solvation = -12678.111886 eV Core-core repulsion = 10235.311246 eV Total energy + Delta-G solvation = -2442.800640 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27474 -40.19562 -37.97473 -34.83303 -34.43864 -32.00651 -30.81111 -27.33139 -25.03103 -23.20292 -21.74759 -19.83995 -19.49856 -18.18657 -17.50206 -16.80474 -16.29806 -15.99926 -15.69534 -15.52293 -15.15595 -14.57867 -14.29584 -14.11431 -13.14384 -12.96612 -12.59780 -12.52894 -12.00398 -11.50458 -11.14459 -10.94832 -10.72657 -9.94082 -9.23681 -8.52721 -6.25242 -0.10619 0.56153 1.30115 1.32772 1.50374 1.88020 2.26152 2.44661 2.77509 3.04843 3.15520 3.89066 4.03227 4.22609 4.31296 4.58728 4.72481 5.01658 5.28529 5.32330 5.55721 5.69001 5.78993 5.90450 6.08351 6.44276 6.81854 7.30732 7.54806 8.58239 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.048993 B = 0.008534 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.376817 B = 3280.224476 C = 3839.168621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.400 4.400 8 H 0.091 0.909 9 O -0.247 6.247 10 C 0.113 3.887 11 C -0.206 4.206 12 C -0.074 4.074 13 C -0.134 4.134 14 C -0.108 4.108 15 C 0.567 3.433 16 N -0.820 5.820 17 O -0.591 6.591 18 C -0.146 4.146 19 H 0.286 0.714 20 H 0.122 0.878 21 H 0.164 0.836 22 H 0.174 0.826 23 H 0.420 0.580 24 H 0.415 0.585 25 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.915 -12.581 -0.991 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.183 4.183 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.476 4.476 8 H 0.109 0.891 9 O -0.155 6.155 10 C 0.064 3.936 11 C -0.225 4.225 12 C -0.092 4.092 13 C -0.152 4.152 14 C -0.112 4.112 15 C 0.354 3.646 16 N -0.385 5.385 17 O -0.473 6.473 18 C -0.166 4.166 19 H 0.095 0.905 20 H 0.139 0.861 21 H 0.181 0.819 22 H 0.192 0.808 23 H 0.253 0.747 24 H 0.248 0.752 25 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.081 -11.538 -0.958 16.026 hybrid contribution -0.205 0.621 0.013 0.654 sum 10.877 -10.917 -0.946 15.439 Atomic orbital electron populations 1.69706 1.06619 1.29615 1.49812 1.25166 0.95807 1.01809 0.95535 0.85341 0.78757 0.78128 0.79286 1.19168 1.18875 1.19379 1.20766 0.77742 0.96432 1.52697 0.89137 1.83552 1.21651 1.27264 1.82998 1.19397 0.92267 0.85876 0.96028 1.21635 1.00932 0.92959 1.06990 1.21241 0.95014 0.96744 0.96194 1.21398 0.93475 0.97505 1.02857 1.19591 0.92828 0.93618 1.05115 1.18266 0.87364 0.84057 0.74934 1.43424 1.12501 1.07335 1.75254 1.90780 1.67067 1.36844 1.52560 1.20328 0.91116 0.98682 1.06461 0.90473 0.86053 0.81897 0.80833 0.74722 0.75233 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 13.96 21.61 0.30 -53.76 15 2 C 0.02 0.93 5.49 84.83 0.47 1.39 15 3 Si 0.96 46.18 28.62 68.60 1.96 48.14 15 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 15 5 H -0.26 -11.76 7.11 99.48 0.71 -11.06 15 6 H -0.27 -13.24 7.11 99.48 0.71 -12.53 15 7 C -0.40 -23.28 9.95 67.92 0.68 -22.61 15 8 H 0.09 5.35 5.43 -2.91 -0.02 5.33 15 9 O -0.25 -13.61 8.58 -22.88 -0.20 -13.81 15 10 C 0.11 5.31 6.64 22.54 0.15 5.46 15 11 C -0.21 -8.30 9.16 22.44 0.21 -8.09 15 12 C -0.07 -2.11 10.02 22.21 0.22 -1.88 15 13 C -0.13 -3.26 9.54 22.55 0.22 -3.04 15 14 C -0.11 -3.50 5.87 -20.10 -0.12 -3.62 15 15 C 0.57 16.73 8.05 86.79 0.70 17.43 15 16 N -0.82 -13.23 8.82 -175.59 -1.55 -14.78 15 17 O -0.59 -23.06 17.18 -3.88 -0.07 -23.13 15 18 C -0.15 -6.13 9.54 22.66 0.22 -5.92 15 19 H 0.29 15.47 8.31 -92.71 -0.77 14.70 15 20 H 0.12 5.29 5.62 -2.91 -0.02 5.27 15 21 H 0.16 3.25 8.06 -2.91 -0.02 3.23 15 22 H 0.17 2.17 6.40 -2.91 -0.02 2.15 15 23 H 0.42 3.65 6.86 -92.70 -0.64 3.01 15 24 H 0.41 5.19 8.93 -92.71 -0.83 4.36 15 25 H 0.11 5.07 7.65 -2.91 -0.02 5.05 15 Total: -1.00 -73.34 230.00 2.97 -70.37 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -0.21 Total: 7.84 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 2.73 Total: -20.88 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.25 Total: -68.54 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.26 Total: -36.94 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.96 Total: 48.14 kcal Total: -73.34 2.97 -70.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001611426.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.177 kcal (2) G-P(sol) polarization free energy of solvation -73.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds