Wall clock time and date at job start Mon Mar 30 2020 02:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86811 * 119.99365 * 2 1 4 4 H 1.48499 * 109.46947 * 240.00219 * 3 2 1 5 5 H 1.48496 * 109.46955 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46875 * 120.00598 * 3 2 1 7 7 C 1.37870 * 120.00535 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47481 * 179.97438 * 9 7 2 11 11 C 1.38238 * 119.99764 * 89.99892 * 10 9 7 12 12 C 1.38234 * 119.99693 * 179.97438 * 11 10 9 13 13 C 1.38234 * 120.00240 * 0.02562 * 12 11 10 14 14 N 1.48026 * 119.99930 * 179.97438 * 13 12 11 15 15 O 1.21793 * 119.99867 * 0.02562 * 14 13 12 16 16 O 1.21799 * 119.99956 * 179.97438 * 14 13 12 17 17 C 1.38233 * 120.00037 * 0.26327 * 13 12 11 18 18 C 1.38234 * 120.00189 * 270.02215 * 10 9 7 19 19 H 0.96996 * 120.00807 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47170 * 59.99906 * 9 7 2 21 21 H 1.08997 * 109.47316 * 300.00059 * 9 7 2 22 22 H 1.07991 * 120.00287 * 0.02562 * 11 10 9 23 23 H 1.08004 * 120.00214 * 179.97438 * 12 11 10 24 24 H 1.08004 * 119.99939 * 179.72815 * 17 13 12 25 25 H 1.07999 * 119.99990 * 359.97438 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6967 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 6 2.2306 -3.6444 -0.0018 11 6 2.6807 -4.1703 1.1948 12 6 3.5786 -5.2212 1.1936 13 6 4.0269 -5.7461 -0.0041 14 7 4.9889 -6.8711 -0.0053 15 8 5.3851 -7.3347 1.0490 16 8 5.3835 -7.3339 -1.0606 17 6 3.5814 -5.2164 -1.2006 18 6 2.6792 -4.1689 -1.1995 19 1 -0.4851 0.8399 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6250 -2.5571 0.8896 22 1 2.3302 -3.7606 2.1305 23 1 3.9307 -5.6319 2.1285 24 1 3.9350 -5.6235 -2.1364 25 1 2.3275 -3.7582 -2.1344 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002510877.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:56 Heat of formation + Delta-G solvation = -9.900517 kcal Electronic energy + Delta-G solvation = -12525.764003 eV Core-core repulsion = 10085.404438 eV Total energy + Delta-G solvation = -2440.359565 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.21855 -40.41704 -37.65480 -35.67634 -33.61102 -32.28046 -30.04236 -27.14866 -24.83044 -24.00596 -22.36378 -20.30249 -19.73865 -18.62453 -18.54965 -17.00360 -16.37785 -16.13537 -15.52568 -14.72791 -14.67223 -13.97901 -13.47543 -13.42515 -12.71807 -12.67651 -12.61673 -12.28637 -12.27532 -12.20911 -11.71025 -11.69255 -10.63865 -10.27892 -10.12411 -8.26456 -6.39135 -1.12208 0.10406 0.41909 0.43186 1.42227 1.42443 1.50774 2.32879 2.49933 3.07573 3.51684 3.60968 3.92957 4.02596 4.19052 4.39678 4.72618 4.84185 5.04819 5.10772 5.21302 5.28863 5.61937 5.67291 5.69902 6.05402 6.56857 6.72791 7.30627 8.83196 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.061350 B = 0.006685 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.285056 B = 4187.216678 C = 4220.781314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.047 3.953 10 C 0.003 3.997 11 C -0.124 4.124 12 C -0.046 4.046 13 C -0.083 4.083 14 N 0.039 4.961 15 O -0.184 6.184 16 O -0.184 6.184 17 C -0.046 4.046 18 C -0.124 4.124 19 H 0.267 0.733 20 H 0.021 0.979 21 H 0.021 0.979 22 H 0.153 0.847 23 H 0.166 0.834 24 H 0.166 0.834 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 -7.193 -0.004 8.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.076 0.924 9 C 0.010 3.990 10 C 0.002 3.998 11 C -0.142 4.142 12 C -0.065 4.065 13 C -0.167 4.167 14 N 0.552 4.448 15 O -0.396 6.396 16 O -0.397 6.397 17 C -0.065 4.065 18 C -0.142 4.142 19 H 0.076 0.924 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.171 0.829 23 H 0.184 0.816 24 H 0.184 0.816 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.532 -6.569 -0.004 7.981 hybrid contribution 0.368 0.651 0.000 0.748 sum 4.900 -5.918 -0.004 7.683 Atomic orbital electron populations 1.70028 1.07510 1.28245 1.50531 1.25795 0.95652 1.02796 0.94375 0.85561 0.78335 0.78445 0.79128 1.19376 1.20854 1.19386 1.21248 0.93211 0.90740 1.52023 0.92352 1.18303 0.92832 0.90076 0.97789 1.21018 0.92872 0.92347 0.93525 1.21265 0.97705 0.95765 0.99481 1.21150 0.93974 0.94135 0.97218 1.21169 1.01947 0.95428 0.98113 1.43811 0.99882 1.01106 0.99978 1.94482 1.60898 1.63289 1.20977 1.94483 1.60998 1.63337 1.20840 1.21151 0.93962 0.94117 0.97242 1.21265 0.97645 0.95842 0.99466 0.92382 0.96058 0.96050 0.82901 0.81614 0.81615 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.20 13.29 21.44 0.28 -50.91 15 2 C 0.01 0.69 5.46 84.65 0.46 1.16 15 3 Si 0.96 40.94 29.54 68.60 2.03 42.97 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 15 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 15 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 7 C -0.53 -27.10 9.09 25.60 0.23 -26.87 15 8 H 0.06 2.90 7.74 -2.91 -0.02 2.88 15 9 C 0.05 2.14 5.10 29.10 0.15 2.29 15 10 C 0.00 0.10 5.07 -19.87 -0.10 0.00 15 11 C -0.12 -3.89 9.70 22.27 0.22 -3.68 15 12 C -0.05 -1.30 9.56 22.27 0.21 -1.09 15 13 C -0.08 -2.52 6.85 36.37 0.25 -2.27 15 14 N 0.04 1.24 4.45 -46.46 -0.21 1.03 15 15 O -0.18 -5.99 18.45 18.89 0.35 -5.65 15 16 O -0.18 -6.00 18.45 18.89 0.35 -5.65 15 17 C -0.05 -1.30 9.56 22.27 0.21 -1.09 15 18 C -0.12 -3.89 9.70 22.27 0.22 -3.68 15 19 H 0.27 14.04 8.31 -92.71 -0.77 13.27 15 20 H 0.02 1.02 8.09 -2.38 -0.02 1.01 15 21 H 0.02 1.03 8.09 -2.39 -0.02 1.01 15 22 H 0.15 4.46 8.06 -2.92 -0.02 4.43 15 23 H 0.17 3.94 7.61 -2.91 -0.02 3.92 15 24 H 0.17 3.95 7.61 -2.91 -0.02 3.92 15 25 H 0.15 4.46 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -56.44 239.15 5.85 -50.59 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.20 Total: 2.85 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 1.85 Total: -35.23 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.08 Total: -49.88 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.70 Total: -11.30 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -56.44 5.85 -50.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002510877.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.692 kcal (2) G-P(sol) polarization free energy of solvation -56.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds