Wall clock time and date at job start Mon Mar 30 2020 02:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31539 * 1 3 3 Si 1.86794 * 120.00139 * 2 1 4 4 H 1.48497 * 109.47197 * 269.99715 * 3 2 1 5 5 H 1.48498 * 109.47109 * 29.99578 * 3 2 1 6 6 H 1.48505 * 109.47280 * 149.99951 * 3 2 1 7 7 C 1.38671 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00108 * 0.02562 * 7 2 1 9 9 O 1.34813 * 119.99817 * 180.27924 * 7 2 1 10 10 C 1.35583 * 117.00115 * 174.63881 * 9 7 2 11 11 C 1.38762 * 120.15596 * 5.56493 * 10 9 7 12 12 C 1.38093 * 120.07518 * 179.76936 * 11 10 9 13 13 C 1.38525 * 120.39431 * 0.50880 * 12 11 10 14 14 C 1.37888 * 120.31379 * 359.74767 * 13 12 11 15 15 C 1.39626 * 119.91320 * 359.97438 * 14 13 12 16 16 C 1.47444 * 120.19142 * 180.02562 * 15 14 13 17 17 N 1.29432 * 119.99936 * 179.97438 * 16 15 14 18 18 O 1.41600 * 120.00009 * 180.02562 * 17 16 15 19 19 H 0.96999 * 119.99818 * 0.02562 * 1 2 3 20 20 H 1.08000 * 119.96259 * 0.02562 * 11 10 9 21 21 H 1.08003 * 119.80332 * 180.26076 * 12 11 10 22 22 H 1.08002 * 119.84129 * 179.76709 * 13 12 11 23 23 H 1.07996 * 120.04127 * 179.97438 * 14 13 12 24 24 H 1.07997 * 119.99919 * 359.97246 * 16 15 14 25 25 H 0.96699 * 114.00096 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4970 2.0463 -1.4000 5 1 1.4468 2.6526 0.6999 6 1 3.5470 1.4401 0.7001 7 6 2.0087 -1.2010 0.0005 8 1 1.4686 -2.1362 0.0005 9 8 3.3568 -1.2010 0.0062 10 6 3.9718 -2.4040 0.1193 11 6 3.2243 -3.5730 0.1067 12 6 3.8529 -4.7976 0.2172 13 6 5.2297 -4.8691 0.3517 14 6 5.9878 -3.7174 0.3716 15 6 5.3662 -2.4726 0.2550 16 6 6.1709 -1.2373 0.2748 17 7 5.5909 -0.0853 0.1660 18 8 6.3638 1.1011 0.1845 19 1 -0.4850 0.8401 -0.0004 20 1 2.1501 -3.5253 0.0061 21 1 3.2672 -5.7049 0.2026 22 1 5.7117 -5.8314 0.4413 23 1 7.0609 -3.7782 0.4771 24 1 7.2443 -1.2936 0.3802 25 1 5.8430 1.9111 0.0969 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013747796.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:53 Heat of formation + Delta-G solvation = 14.667936 kcal Electronic energy + Delta-G solvation = -13011.822979 eV Core-core repulsion = 10572.528782 eV Total energy + Delta-G solvation = -2439.294197 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.28242 -36.66218 -36.13326 -33.02024 -32.38620 -29.76450 -28.80875 -25.36399 -23.08809 -21.53219 -19.89280 -17.89820 -17.24040 -16.94872 -15.27770 -14.90384 -14.50571 -14.00297 -13.78668 -13.62619 -12.94329 -12.79362 -12.37773 -12.19638 -11.55189 -11.03169 -10.82968 -10.77403 -10.09620 -9.85725 -9.59004 -9.10180 -8.90018 -8.04573 -7.33891 -6.48031 -4.12196 1.51563 2.22899 3.09190 3.25577 3.27882 3.49955 3.65802 4.27050 4.50287 4.75083 5.08307 5.21414 5.52609 5.63595 5.83780 6.11855 6.20076 6.45288 6.64338 6.86192 7.08064 7.19741 7.29218 7.52295 7.71178 7.95747 8.32748 8.87336 9.51538 10.57966 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.028412 B = 0.014534 C = 0.009654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.247421 B = 1926.011179 C = 2899.562241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.171 6.171 10 C 0.182 3.818 11 C -0.226 4.226 12 C -0.059 4.059 13 C -0.215 4.215 14 C -0.042 4.042 15 C -0.148 4.148 16 C 0.142 3.858 17 N -0.304 5.304 18 O -0.436 6.436 19 H 0.281 0.719 20 H 0.136 0.864 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 -3.881 0.590 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.160 1.160 7 C -0.468 4.468 8 H 0.124 0.876 9 O -0.071 6.071 10 C 0.125 3.875 11 C -0.245 4.245 12 C -0.078 4.078 13 C -0.234 4.234 14 C -0.063 4.063 15 C -0.151 4.151 16 C -0.066 4.066 17 N -0.049 5.049 18 O -0.341 6.341 19 H 0.091 0.909 20 H 0.154 0.846 21 H 0.130 0.870 22 H 0.130 0.870 23 H 0.137 0.863 24 H 0.126 0.874 25 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.504 -3.338 0.534 9.151 hybrid contribution 0.494 0.883 -0.017 1.012 sum 8.998 -2.455 0.517 9.341 Atomic orbital electron populations 1.69650 1.05822 1.28793 1.46701 1.24509 0.94990 0.99255 0.95011 0.86191 0.81344 0.80540 0.79102 1.20166 1.21573 1.15977 1.20907 0.77276 0.96691 1.51919 0.87611 1.83745 1.21895 1.24959 1.76499 1.19203 0.90769 0.85841 0.91671 1.21279 1.01300 0.91772 1.10117 1.20944 0.94412 0.96740 0.95751 1.20542 0.93970 0.97301 1.11556 1.20696 0.98635 0.90531 0.96429 1.17454 0.89907 0.90782 1.17001 1.24082 0.97268 0.90572 0.94667 1.77254 1.20535 0.92668 1.14468 1.88259 1.35709 1.15099 1.95082 0.90943 0.84643 0.86967 0.86961 0.86307 0.87389 0.75400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.03 13.96 55.48 0.77 -24.25 15 2 C 0.07 1.87 5.49 -17.52 -0.10 1.77 15 3 Si 0.90 21.54 28.62 -169.99 -4.86 16.68 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 15 6 H -0.24 -5.53 6.49 56.52 0.37 -5.17 15 7 C -0.39 -10.91 9.95 30.89 0.31 -10.60 15 8 H 0.11 2.98 5.44 -52.49 -0.29 2.69 15 9 O -0.17 -4.46 6.47 0.61 0.00 -4.45 15 10 C 0.18 4.19 6.66 -38.63 -0.26 3.93 15 11 C -0.23 -4.72 9.16 -39.44 -0.36 -5.08 15 12 C -0.06 -1.01 10.03 -39.53 -0.40 -1.41 15 13 C -0.21 -3.34 10.03 -39.60 -0.40 -3.74 15 14 C -0.04 -0.68 9.78 -39.19 -0.38 -1.07 15 15 C -0.15 -2.94 5.88 -104.87 -0.62 -3.56 15 16 C 0.14 2.77 10.90 -14.81 -0.16 2.61 15 17 N -0.30 -6.66 9.37 32.10 0.30 -6.36 15 18 O -0.44 -8.31 14.95 -11.47 -0.17 -8.48 15 19 H 0.28 7.45 8.31 -40.82 -0.34 7.11 15 20 H 0.14 2.96 5.64 -52.49 -0.30 2.66 15 21 H 0.11 1.60 8.06 -52.48 -0.42 1.17 15 22 H 0.11 1.40 8.06 -52.49 -0.42 0.98 15 23 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 24 H 0.11 1.73 8.06 -52.49 -0.42 1.31 15 25 H 0.40 6.20 9.28 45.56 0.42 6.63 15 LS Contribution 232.85 15.07 3.51 3.51 Total: -1.00 -30.72 232.85 -3.83 -34.55 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -1.02 Total: 5.95 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.36 Total: -17.15 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 1.08 Total: -30.61 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.17 Total: -12.93 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.86 Total: 16.68 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.72 -3.83 -34.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013747796.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.220 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds