Wall clock time and date at job start Mon Mar 30 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30474 * 1 3 3 Si 1.86796 * 120.00357 * 2 1 4 4 H 1.48501 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47128 * 300.00107 * 3 2 1 6 6 H 1.48498 * 109.47030 * 60.00270 * 3 2 1 7 7 C 1.40512 * 119.99352 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.40398 * 120.00394 * 0.02562 * 7 2 1 10 10 S 1.71203 * 119.99871 * 359.97438 * 9 7 2 11 11 N 1.34783 * 120.00345 * 179.97438 * 9 7 2 12 12 C 1.39741 * 120.00238 * 185.48630 * 11 9 7 13 13 C 1.38924 * 120.07416 * 221.99300 * 12 11 9 14 14 C 1.38100 * 119.92340 * 179.97438 * 13 12 11 15 15 C 1.38292 * 120.07218 * 359.97438 * 14 13 12 16 16 C 1.38291 * 120.15378 * 0.02562 * 15 14 13 17 17 C 1.38088 * 120.07689 * 0.02562 * 16 15 14 18 18 H 0.97006 * 119.99881 * 359.97438 * 1 2 3 19 19 H 0.97001 * 119.99093 * 5.48504 * 11 9 7 20 20 H 1.07999 * 120.03858 * 359.69397 * 13 12 11 21 21 H 1.08001 * 119.95991 * 179.97438 * 14 13 12 22 22 H 1.08000 * 119.92138 * 180.02562 * 15 14 13 23 23 H 1.08008 * 119.95733 * 180.02562 * 16 15 14 24 24 H 1.08001 * 120.03721 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2388 1.6176 0.0000 4 1 3.6988 1.3461 0.0006 5 1 1.8801 2.3963 -1.2124 6 1 1.8802 2.3963 1.2125 7 6 2.0072 -1.2170 0.0005 8 1 3.0872 -1.2170 0.0001 9 6 1.3051 -2.4328 0.0005 10 16 -0.4069 -2.4327 0.0005 11 7 1.9789 -3.6001 0.0005 12 6 1.2849 -4.8075 -0.1152 13 6 1.6446 -5.8953 0.6706 14 6 0.9563 -7.0868 0.5541 15 6 -0.0902 -7.1977 -0.3431 16 6 -0.4509 -6.1169 -1.1268 17 6 0.2338 -4.9228 -1.0162 18 1 -0.4850 0.8401 0.0004 19 1 2.9456 -3.6020 0.0808 20 1 2.4645 -5.8106 1.3684 21 1 1.2357 -7.9330 1.1643 22 1 -0.6271 -8.1306 -0.4320 23 1 -1.2690 -6.2069 -1.8262 24 1 -0.0482 -4.0792 -1.6288 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033373263.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:56 Heat of formation + Delta-G solvation = 11.190313 kcal Electronic energy + Delta-G solvation = -10834.363546 eV Core-core repulsion = 8837.671419 eV Total energy + Delta-G solvation = -1996.692127 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.37458 -37.57898 -35.60777 -31.71625 -31.28624 -28.78271 -24.65436 -23.34934 -22.32919 -20.18695 -18.30054 -17.89221 -16.78335 -16.25122 -15.58650 -15.33259 -14.55043 -14.21299 -13.90415 -13.46909 -13.38715 -13.25844 -12.55555 -12.26409 -12.00624 -11.84831 -11.20812 -11.09045 -9.83089 -9.65750 -9.28965 -8.22480 -7.44092 -6.50812 0.47626 0.71040 1.16388 1.38491 1.58952 1.67445 2.10515 2.34936 2.85443 2.92048 3.15355 4.17238 4.27753 4.44876 4.70921 4.82398 4.85073 4.98577 5.27351 5.37669 5.62649 5.68457 5.81480 5.92123 6.12396 6.27058 6.63651 7.00220 8.08959 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.070949 B = 0.009153 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.556393 B = 3058.296541 C = 3326.600270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.648 5.648 2 C -0.010 4.010 3 Si 1.005 2.995 4 H -0.238 1.238 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.376 4.376 8 H 0.121 0.879 9 C 0.335 3.665 10 S -0.824 6.824 11 N -0.660 5.660 12 C 0.135 3.865 13 C -0.156 4.156 14 C -0.116 4.116 15 C -0.137 4.137 16 C -0.131 4.131 17 C -0.106 4.106 18 H 0.271 0.729 19 H 0.405 0.595 20 H 0.134 0.866 21 H 0.154 0.846 22 H 0.149 0.851 23 H 0.126 0.874 24 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.391 -5.615 -0.139 9.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.269 5.269 2 C -0.243 4.243 3 Si 0.823 3.177 4 H -0.161 1.161 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.417 4.417 8 H 0.139 0.861 9 C 0.105 3.895 10 S -0.679 6.679 11 N -0.285 5.285 12 C 0.039 3.961 13 C -0.178 4.178 14 C -0.135 4.135 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.130 4.130 18 H 0.085 0.915 19 H 0.243 0.757 20 H 0.151 0.849 21 H 0.172 0.828 22 H 0.167 0.833 23 H 0.144 0.856 24 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.882 -5.561 -0.129 8.095 hybrid contribution 1.044 0.968 -0.013 1.424 sum 6.926 -4.593 -0.142 8.312 Atomic orbital electron populations 1.72055 1.09092 1.27798 1.17962 1.27499 0.96341 1.05605 0.94835 0.84807 0.79539 0.74466 0.78929 1.16064 1.19090 1.19097 1.20845 0.96800 0.89964 1.34074 0.86113 1.20878 0.93372 0.87079 0.88131 1.91958 1.02594 1.92714 1.80632 1.41988 1.08718 1.02432 1.75326 1.17956 0.96230 0.86060 0.95838 1.21140 1.03508 0.93730 0.99408 1.21170 0.95868 0.97231 0.99250 1.21333 0.98255 0.98904 0.97039 1.21100 1.00283 0.92490 1.01271 1.21304 0.96507 0.96943 0.98243 0.91507 0.75671 0.84856 0.82814 0.83336 0.85618 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -35.49 10.02 21.92 0.22 -35.27 14 2 C -0.01 -0.50 5.49 85.45 0.47 -0.03 14 3 Si 1.01 34.49 29.56 68.60 2.03 36.51 14 4 H -0.24 -7.31 7.11 99.48 0.71 -6.60 14 5 H -0.27 -8.99 7.11 99.48 0.71 -8.28 14 6 H -0.27 -8.99 7.11 99.48 0.71 -8.29 14 7 C -0.38 -18.51 9.26 23.35 0.22 -18.29 14 8 H 0.12 4.98 7.85 -2.91 -0.02 4.96 14 9 C 0.34 18.21 6.69 84.77 0.57 18.78 14 10 S -0.82 -52.19 22.89 -56.49 -1.29 -53.48 14 11 N -0.66 -29.86 5.30 -185.72 -0.98 -30.84 14 12 C 0.13 5.92 5.90 38.21 0.23 6.14 14 13 C -0.16 -5.51 9.97 22.40 0.22 -5.29 14 14 C -0.12 -3.45 10.04 22.25 0.22 -3.23 14 15 C -0.14 -4.20 10.04 22.30 0.22 -3.97 14 16 C -0.13 -4.95 10.04 22.25 0.22 -4.72 14 17 C -0.11 -4.91 7.86 22.40 0.18 -4.73 14 18 H 0.27 13.37 8.29 -92.70 -0.77 12.60 14 19 H 0.41 15.04 8.78 -92.71 -0.81 14.22 14 20 H 0.13 4.00 8.06 -2.91 -0.02 3.98 14 21 H 0.15 3.30 8.06 -2.91 -0.02 3.27 14 22 H 0.15 3.39 8.06 -2.91 -0.02 3.37 14 23 H 0.13 4.25 8.06 -2.91 -0.02 4.23 14 24 H 0.10 5.35 6.28 -4.42 -0.03 5.33 14 Total: -1.00 -72.55 227.83 2.91 -69.64 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.39 Total: 28.78 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 2.55 Total: -15.35 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -0.76 Total: -66.11 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.51 kcal Atomic # 16 Polarization: -52.19 SS G_CDS: -1.29 Total: -53.48 kcal Total: -72.55 2.91 -69.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033373263.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.830 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds