Wall clock time and date at job start Mon Mar 30 2020 02:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.50698 * 109.47462 * 180.02562 * 9 7 2 11 11 C 1.38262 * 119.99506 * 269.72884 * 10 9 7 12 12 C 1.38217 * 119.99323 * 179.78763 * 11 10 9 13 13 C 1.38260 * 120.00307 * 0.46380 * 12 11 10 14 14 C 1.38209 * 119.99763 * 359.76647 * 13 12 11 15 15 N 1.48019 * 120.00050 * 180.02562 * 14 13 12 16 16 O 1.21796 * 120.00228 * 180.02562 * 15 14 13 17 17 O 1.21797 * 119.99708 * 0.02562 * 15 14 13 18 18 C 1.38213 * 120.00211 * 90.00171 * 10 9 7 19 19 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 21 21 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 22 22 H 1.07996 * 120.00484 * 359.97438 * 11 10 9 23 23 H 1.07998 * 119.99913 * 180.24765 * 12 11 10 24 24 H 1.07999 * 120.00071 * 179.78972 * 13 12 11 25 25 H 1.08001 * 119.99477 * 359.97438 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0138 -2.6148 -0.0182 11 6 4.2546 -3.2680 1.1763 12 6 4.7112 -4.5726 1.1707 13 6 4.9362 -5.2211 -0.0294 14 6 4.7000 -4.5665 -1.2235 15 7 4.9404 -5.2610 -2.5084 16 8 4.7327 -4.6840 -3.5607 17 8 5.3459 -6.4094 -2.5133 18 6 4.2392 -3.2630 -1.2180 19 1 -0.4850 0.8400 0.0004 20 1 3.8711 -0.6780 -0.9023 21 1 3.8785 -0.6824 0.8776 22 1 4.0831 -2.7599 2.1138 23 1 4.8955 -5.0842 2.1038 24 1 5.2962 -6.2393 -0.0338 25 1 4.0549 -2.7513 -2.1511 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036203775.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:36 Heat of formation + Delta-G solvation = -7.268136 kcal Electronic energy + Delta-G solvation = -12659.252073 eV Core-core repulsion = 10219.006656 eV Total energy + Delta-G solvation = -2440.245417 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.26606 -40.42823 -37.69828 -35.60565 -33.68683 -32.73562 -29.76183 -27.56516 -25.15054 -23.51805 -22.40054 -19.83331 -19.67306 -19.04749 -18.64290 -17.43832 -16.45257 -16.39406 -15.42841 -14.88266 -14.36380 -14.03592 -13.64998 -13.22252 -13.07078 -12.72342 -12.51965 -12.32827 -12.17956 -12.11705 -11.84753 -11.66980 -10.82817 -10.45485 -9.93129 -8.34167 -6.41674 -1.16944 0.12126 0.37938 0.41397 1.36413 1.39991 1.50029 2.32598 2.43972 3.00924 3.50173 3.60178 3.99250 4.07438 4.09990 4.32807 4.74757 4.80095 4.98086 4.98625 5.09284 5.19303 5.47055 5.55872 5.64933 6.16480 6.52163 6.64980 7.23021 8.82116 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.043073 B = 0.008274 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.899610 B = 3383.145431 C = 3679.298263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.258 1.258 5 H -0.245 1.245 6 H -0.288 1.288 7 C -0.528 4.528 8 H 0.029 0.971 9 C 0.018 3.982 10 C -0.056 4.056 11 C -0.065 4.065 12 C -0.099 4.099 13 C -0.068 4.068 14 C -0.062 4.062 15 N 0.034 4.966 16 O -0.215 6.215 17 O -0.150 6.150 18 C -0.074 4.074 19 H 0.269 0.731 20 H 0.033 0.967 21 H 0.052 0.948 22 H 0.160 0.840 23 H 0.191 0.809 24 H 0.174 0.826 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.002 -6.422 4.212 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.183 1.183 5 H -0.168 1.168 6 H -0.214 1.214 7 C -0.566 4.566 8 H 0.047 0.953 9 C -0.019 4.019 10 C -0.057 4.057 11 C -0.083 4.083 12 C -0.117 4.117 13 C -0.087 4.087 14 C -0.145 4.145 15 N 0.548 4.452 16 O -0.419 6.419 17 O -0.372 6.372 18 C -0.094 4.094 19 H 0.078 0.922 20 H 0.052 0.948 21 H 0.071 0.929 22 H 0.178 0.822 23 H 0.208 0.792 24 H 0.192 0.808 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.714 -5.921 4.751 13.960 hybrid contribution -0.399 0.636 -0.840 1.127 sum 11.316 -5.286 3.911 13.087 Atomic orbital electron populations 1.70049 1.08472 1.28485 1.51667 1.25972 0.95544 1.03478 0.93675 0.85662 0.79456 0.77959 0.79653 1.18271 1.16807 1.21374 1.21108 0.90598 0.93153 1.51759 0.95251 1.18740 0.94424 0.89780 0.98946 1.20203 0.95235 0.98081 0.92143 1.21935 0.92631 0.95113 0.98613 1.21641 0.97762 0.93793 0.98469 1.21351 0.96363 1.01834 0.89147 1.21284 1.14838 0.95149 0.83192 1.43915 0.97091 1.00608 1.03566 1.94546 1.57668 1.68487 1.21192 1.94426 1.46057 1.02349 1.94417 1.20913 0.95816 0.92061 1.00587 0.92227 0.94842 0.92949 0.82236 0.79163 0.80841 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 13.96 21.45 0.30 -57.03 15 2 C 0.01 0.62 5.47 84.65 0.46 1.08 15 3 Si 0.95 41.16 27.47 68.60 1.88 43.04 15 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 5 H -0.24 -9.74 6.54 99.48 0.65 -9.09 15 6 H -0.29 -12.57 7.11 99.48 0.71 -11.86 15 7 C -0.53 -28.58 9.65 25.60 0.25 -28.34 15 8 H 0.03 1.79 7.98 -2.91 -0.02 1.77 15 9 C 0.02 0.77 4.17 29.10 0.12 0.89 15 10 C -0.06 -2.01 5.07 -19.87 -0.10 -2.11 15 11 C -0.06 -1.78 9.70 22.27 0.22 -1.57 15 12 C -0.10 -2.05 10.05 22.27 0.22 -1.83 15 13 C -0.07 -1.66 9.56 22.27 0.21 -1.44 15 14 C -0.06 -2.01 6.85 36.37 0.25 -1.76 15 15 N 0.03 1.20 4.45 -46.47 -0.21 0.99 15 16 O -0.21 -8.40 18.45 18.89 0.35 -8.05 15 17 O -0.15 -4.98 18.45 18.89 0.35 -4.63 15 18 C -0.07 -2.72 9.21 22.27 0.21 -2.51 15 19 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 20 H 0.03 1.42 7.14 -2.39 -0.02 1.40 15 21 H 0.05 2.01 7.51 -2.39 -0.02 1.99 15 22 H 0.16 3.73 8.06 -2.91 -0.02 3.71 15 23 H 0.19 2.13 8.06 -2.91 -0.02 2.10 15 24 H 0.17 3.22 7.61 -2.91 -0.02 3.20 15 25 H 0.13 5.12 7.61 -2.91 -0.02 5.10 15 Total: -1.00 -65.97 235.54 5.66 -60.31 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 1.14 Total: 2.94 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 1.84 Total: -37.58 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.09 Total: -56.04 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.70 Total: -12.68 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.04 kcal Total: -65.97 5.66 -60.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036203775.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.045 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds