Wall clock time and date at job start Mon Mar 30 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47151 * 269.99722 * 3 2 1 5 5 H 1.48497 * 109.47298 * 30.00060 * 3 2 1 6 6 H 1.48506 * 109.46962 * 150.00137 * 3 2 1 7 7 C 1.38723 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99697 * 179.97438 * 7 2 1 9 9 O 1.34763 * 119.99657 * 0.02562 * 7 2 1 10 10 C 1.35575 * 116.99502 * 185.06253 * 9 7 2 11 11 C 1.39038 * 119.92904 * 354.37874 * 10 9 7 12 12 C 1.37629 * 120.19096 * 179.76387 * 11 10 9 13 13 C 1.40071 * 120.03019 * 0.51144 * 12 11 10 14 14 C 1.46865 * 120.06814 * 179.76446 * 13 12 11 15 15 O 1.21300 * 120.00032 * 359.97438 * 14 13 12 16 16 C 1.40005 * 119.85605 * 359.74187 * 13 12 11 17 17 C 1.38224 * 119.81491 * 0.02562 * 16 13 12 18 18 N 1.39835 * 120.01780 * 180.02562 * 17 16 13 19 19 H 0.97003 * 119.99789 * 0.02562 * 1 2 3 20 20 H 1.08007 * 119.90802 * 359.97438 * 11 10 9 21 21 H 1.08002 * 119.98175 * 180.25334 * 12 11 10 22 22 H 1.08004 * 119.99858 * 179.97438 * 14 13 12 23 23 H 1.08003 * 120.09211 * 180.02562 * 16 13 12 24 24 H 0.96999 * 120.00062 * 179.97438 * 18 17 16 25 25 H 0.96996 * 120.00579 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0087 -1.2014 0.0005 8 1 3.0887 -1.2013 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0691 -3.5031 0.1077 11 6 3.4577 -3.4346 0.0932 12 6 4.2085 -4.5826 0.2065 13 6 3.5745 -5.8258 0.3261 14 6 4.3748 -7.0518 0.4418 15 8 5.5861 -6.9885 0.4334 16 6 2.1763 -5.8972 0.3355 17 6 1.4283 -4.7399 0.2262 18 7 0.0316 -4.8062 0.2357 19 1 -0.4850 0.8401 -0.0004 20 1 3.9488 -2.4776 -0.0038 21 1 5.2869 -4.5251 0.1990 22 1 3.8847 -8.0099 0.5344 23 1 1.6834 -6.8537 0.4280 24 1 -0.4930 -3.9939 0.1594 25 1 -0.4128 -5.6644 0.3187 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036225193.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:15 Heat of formation + Delta-G solvation = -38.696202 kcal Electronic energy + Delta-G solvation = -12724.239436 eV Core-core repulsion = 10282.631196 eV Total energy + Delta-G solvation = -2441.608240 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42572 -38.22829 -36.33349 -33.62420 -32.43329 -29.72341 -27.79296 -25.67736 -23.54647 -21.88433 -19.99254 -18.19263 -17.35916 -16.26607 -15.79795 -14.92229 -14.65749 -14.18262 -14.03103 -13.93721 -13.48211 -13.11329 -12.50128 -11.82499 -11.62927 -11.55184 -11.03560 -10.94239 -10.54457 -9.89487 -9.60356 -9.18701 -8.97182 -7.76600 -6.64447 -6.60842 -4.14131 1.43857 2.33010 3.01257 3.06558 3.11166 3.22314 3.83891 4.57764 4.58980 4.85763 4.95058 5.04949 5.57274 5.88343 5.98698 6.13472 6.50481 6.62209 6.70535 6.97980 7.17182 7.31151 7.57356 7.80677 8.02645 8.20040 8.51874 8.83038 9.49380 10.53839 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.045412 B = 0.008622 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.432987 B = 3246.722188 C = 3850.742709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.387 4.387 8 H 0.096 0.904 9 O -0.168 6.168 10 C 0.127 3.873 11 C -0.228 4.228 12 C -0.046 4.046 13 C -0.253 4.253 14 C 0.388 3.612 15 O -0.497 6.497 16 C -0.123 4.123 17 C 0.143 3.857 18 N -0.882 5.882 19 H 0.273 0.727 20 H 0.132 0.868 21 H 0.115 0.885 22 H 0.084 0.916 23 H 0.118 0.882 24 H 0.405 0.595 25 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -6.347 0.502 6.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.463 4.463 8 H 0.114 0.886 9 O -0.070 6.070 10 C 0.069 3.931 11 C -0.249 4.249 12 C -0.066 4.066 13 C -0.256 4.256 14 C 0.251 3.749 15 O -0.374 6.374 16 C -0.148 4.148 17 C 0.041 3.959 18 N -0.424 5.424 19 H 0.083 0.917 20 H 0.149 0.851 21 H 0.133 0.867 22 H 0.100 0.900 23 H 0.136 0.864 24 H 0.234 0.766 25 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.243 -6.041 0.475 6.186 hybrid contribution -0.102 0.835 -0.006 0.841 sum 1.141 -5.206 0.469 5.350 Atomic orbital electron populations 1.69993 1.06059 1.28117 1.44821 1.25347 0.95911 0.99007 0.96208 0.85656 0.79034 0.79613 0.78893 1.19715 1.20143 1.18967 1.21443 0.92117 0.80450 1.52264 0.88624 1.83786 1.34664 1.11519 1.77015 1.19252 0.90556 0.86837 0.96418 1.20871 0.92743 0.99221 1.12057 1.20836 0.98955 0.91138 0.95653 1.19964 0.93544 0.95185 1.16908 1.23658 0.88492 0.92534 0.70168 1.90449 1.17770 1.90354 1.38875 1.20204 0.92437 0.95492 1.06656 1.16919 0.84442 0.91040 1.03542 1.42132 1.02830 1.10904 1.86572 0.91741 0.85052 0.86663 0.89972 0.86400 0.76633 0.78559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.57 13.67 55.48 0.76 -22.81 15 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 15 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.64 15 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 15 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 15 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 7 C -0.39 -10.27 9.48 30.91 0.29 -9.98 15 8 H 0.10 2.37 5.18 -52.49 -0.27 2.10 15 9 O -0.17 -4.43 8.98 0.77 0.01 -4.43 15 10 C 0.13 2.93 6.68 -38.70 -0.26 2.67 15 11 C -0.23 -4.95 9.14 -39.51 -0.36 -5.31 15 12 C -0.05 -0.90 9.58 -39.12 -0.37 -1.28 15 13 C -0.25 -4.55 5.87 -105.06 -0.62 -5.17 15 14 C 0.39 6.15 11.44 34.22 0.39 6.54 15 15 O -0.50 -9.48 17.15 5.54 0.10 -9.38 15 16 C -0.12 -2.10 9.63 -38.92 -0.37 -2.48 15 17 C 0.14 2.82 6.76 -83.63 -0.57 2.26 15 18 N -0.88 -15.13 9.08 32.49 0.30 -14.83 15 19 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 20 H 0.13 2.82 5.61 -52.48 -0.29 2.53 15 21 H 0.12 2.16 7.64 -52.49 -0.40 1.76 15 22 H 0.08 0.96 8.06 -52.48 -0.42 0.54 15 23 H 0.12 1.57 8.06 -52.48 -0.42 1.15 15 24 H 0.40 7.58 8.19 -40.82 -0.33 7.24 15 25 H 0.39 5.16 8.84 -40.82 -0.36 4.80 15 LS Contribution 233.71 15.07 3.52 3.52 Total: -1.00 -29.78 233.71 -3.95 -33.73 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -1.64 Total: 11.34 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.96 Total: -11.78 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 1.05 Total: -37.64 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.10 Total: -13.81 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.78 -3.95 -33.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036225193.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.968 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds