Wall clock time and date at job start Mon Mar 30 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31357 * 1 3 3 Si 1.86805 * 120.00015 * 2 1 4 4 H 1.48505 * 109.47057 * 270.00115 * 3 2 1 5 5 H 1.48497 * 109.47052 * 30.00228 * 3 2 1 6 6 H 1.48499 * 109.46971 * 150.00363 * 3 2 1 7 7 C 1.39051 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 179.97438 * 7 2 1 9 9 N 1.36876 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99877 * 179.97438 * 9 7 2 11 11 O 1.21587 * 119.99762 * 0.02562 * 10 9 7 12 12 C 1.47732 * 119.99901 * 180.02562 * 10 9 7 13 13 C 1.39675 * 120.12588 * 359.97438 * 12 10 9 14 14 C 1.37941 * 119.95837 * 180.02562 * 13 12 10 15 15 C 1.38297 * 120.21765 * 359.74181 * 14 13 12 16 16 C 1.38830 * 120.24715 * 0.51731 * 15 14 13 17 17 O 1.35915 * 119.98223 * 179.76648 * 16 15 14 18 18 C 1.38474 * 120.03922 * 359.48359 * 16 15 14 19 19 H 0.96994 * 120.00037 * 359.97438 * 1 2 3 20 20 H 0.97001 * 119.99854 * 0.02562 * 9 7 2 21 21 H 1.08000 * 120.02139 * 359.97438 * 13 12 10 22 22 H 1.08010 * 119.89139 * 180.02562 * 14 13 12 23 23 H 1.07997 * 119.88144 * 180.25611 * 15 14 13 24 24 H 0.96705 * 113.99582 * 269.72069 * 17 16 15 25 25 H 1.07998 * 120.10756 * 180.23084 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5452 1.4401 0.7000 7 6 2.0089 -1.2042 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3245 -2.3896 -0.0005 10 6 1.9984 -3.5568 -0.0016 11 8 3.2143 -3.5567 -0.0021 12 6 1.2598 -4.8362 -0.0022 13 6 -0.1369 -4.8393 -0.0011 14 6 -0.8231 -6.0359 -0.0011 15 6 -0.1327 -7.2342 -0.0075 16 6 1.2556 -7.2414 -0.0032 17 8 1.9287 -8.4222 -0.0048 18 6 1.9550 -6.0463 -0.0032 19 1 -0.4850 0.8400 0.0004 20 1 0.3545 -2.3896 -0.0005 21 1 -0.6794 -3.9054 0.0006 22 1 -1.9032 -6.0370 -0.0007 23 1 -0.6754 -8.1678 -0.0117 24 1 2.1244 -8.7645 0.8782 25 1 3.0350 -6.0506 -0.0036 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714213.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:17 Heat of formation + Delta-G solvation = -59.305963 kcal Electronic energy + Delta-G solvation = -12641.826292 eV Core-core repulsion = 10199.324346 eV Total energy + Delta-G solvation = -2442.501946 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.56844 -37.97296 -36.08882 -34.13354 -31.52425 -30.58820 -29.34338 -25.38211 -22.96988 -22.10639 -19.77999 -18.35310 -17.74178 -16.25064 -15.72381 -15.13963 -14.75120 -14.49284 -13.88863 -13.59043 -13.38782 -12.77238 -11.90439 -11.79390 -11.68236 -11.33454 -11.16403 -10.47341 -10.37703 -10.32844 -9.67199 -8.60401 -8.55100 -8.38867 -8.12100 -6.60435 -3.93171 1.29150 1.58542 3.11271 3.19407 3.25479 3.56729 4.04637 4.29444 4.47960 4.87214 5.18057 5.24863 5.28330 5.57592 5.75406 5.90651 6.16540 6.24662 6.65020 6.71608 6.81559 7.03159 7.39054 7.80911 7.91886 8.46017 9.01718 9.37269 9.93095 10.56396 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.066476 B = 0.007473 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.101762 B = 3746.087469 C = 4154.799500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.024 3.976 3 Si 0.936 3.064 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.295 4.295 8 H 0.109 0.891 9 N -0.540 5.540 10 C 0.462 3.538 11 O -0.597 6.597 12 C -0.077 4.077 13 C -0.113 4.113 14 C -0.109 4.109 15 C -0.148 4.148 16 C 0.092 3.908 17 O -0.501 6.501 18 C -0.104 4.104 19 H 0.276 0.724 20 H 0.394 0.606 21 H 0.130 0.870 22 H 0.126 0.874 23 H 0.124 0.876 24 H 0.386 0.614 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -9.350 1.660 10.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.425 4.425 8 H 0.126 0.874 9 N -0.174 5.174 10 C 0.250 3.750 11 O -0.484 6.484 12 C -0.081 4.081 13 C -0.133 4.133 14 C -0.127 4.127 15 C -0.168 4.168 16 C 0.048 3.952 17 O -0.310 6.310 18 C -0.124 4.124 19 H 0.086 0.914 20 H 0.229 0.771 21 H 0.148 0.852 22 H 0.144 0.856 23 H 0.142 0.858 24 H 0.241 0.759 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.793 -9.061 1.051 9.540 hybrid contribution -0.263 0.736 0.480 0.917 sum -3.056 -8.326 1.531 9.000 Atomic orbital electron populations 1.69582 1.06173 1.28840 1.48227 1.25401 0.95706 1.00153 0.96696 0.85760 0.79308 0.80090 0.78643 1.20105 1.20678 1.19123 1.19866 0.93801 0.82104 1.46707 0.87357 1.41905 1.09537 1.04722 1.61261 1.17702 0.87488 0.83251 0.86523 1.90597 1.13238 1.86970 1.57582 1.20244 0.93316 0.94610 0.99904 1.21473 0.93566 0.98662 0.99560 1.20903 0.99772 0.91721 1.00285 1.21375 0.93401 0.98608 1.03392 1.18337 0.89933 0.84871 1.02068 1.84826 1.77021 1.35838 1.33320 1.21476 1.01235 0.90441 0.99206 0.91360 0.77069 0.85223 0.85589 0.85845 0.75921 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 13.05 55.50 0.72 -22.74 15 2 C 0.02 0.63 5.50 -17.45 -0.10 0.53 15 3 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 15 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 15 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 7 C -0.30 -8.18 9.68 -15.00 -0.15 -8.32 15 8 H 0.11 3.13 7.15 -52.49 -0.38 2.75 15 9 N -0.54 -13.98 5.23 -11.87 -0.06 -14.04 15 10 C 0.46 11.67 7.72 -12.38 -0.10 11.57 15 11 O -0.60 -17.01 15.92 5.29 0.08 -16.92 15 12 C -0.08 -1.58 5.87 -104.99 -0.62 -2.20 15 13 C -0.11 -1.97 9.54 -39.15 -0.37 -2.34 15 14 C -0.11 -1.56 10.02 -39.67 -0.40 -1.96 15 15 C -0.15 -2.08 9.98 -39.34 -0.39 -2.48 15 16 C 0.09 1.45 6.70 -39.28 -0.26 1.18 15 17 O -0.50 -6.76 13.50 -19.47 -0.26 -7.03 15 18 C -0.10 -1.94 9.53 -39.00 -0.37 -2.31 15 19 H 0.28 6.84 8.31 -40.82 -0.34 6.50 15 20 H 0.39 9.59 5.92 -40.82 -0.24 9.34 15 21 H 0.13 2.20 6.40 -52.49 -0.34 1.86 15 22 H 0.13 1.42 8.06 -52.48 -0.42 1.00 15 23 H 0.12 1.40 8.06 -52.49 -0.42 0.97 15 24 H 0.39 3.20 9.06 45.56 0.41 3.61 15 25 H 0.14 2.65 7.65 -52.49 -0.40 2.25 15 LS Contribution 233.72 15.07 3.52 3.52 Total: -1.00 -31.68 233.72 -4.69 -36.37 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -0.92 Total: 11.73 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.75 Total: -6.32 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.66 Total: -36.78 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.18 Total: -23.95 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.68 -4.69 -36.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714213.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.938 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds