Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86800 * 120.00186 * 2 1 4 4 H 1.48500 * 109.46862 * 240.00027 * 3 2 1 5 5 H 1.48500 * 109.47171 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47358 * 120.00280 * 3 2 1 7 7 C 1.39028 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00241 * 179.97438 * 7 2 1 9 9 N 1.36904 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00015 * 180.02562 * 9 7 2 11 11 O 1.21619 * 120.00006 * 0.02562 * 10 9 7 12 12 C 1.47494 * 119.99940 * 179.97438 * 10 9 7 13 13 C 1.39799 * 120.09040 * 180.02562 * 12 10 9 14 14 C 1.37682 * 119.90612 * 180.02562 * 13 12 10 15 15 C 1.39013 * 120.09270 * 0.02562 * 14 13 12 16 16 O 1.35713 * 119.90623 * 179.97438 * 15 14 13 17 17 C 1.39014 * 120.19039 * 0.22663 * 15 14 13 18 18 C 1.37691 * 120.08771 * 359.49232 * 17 15 14 19 19 H 0.96999 * 120.00159 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99967 * 359.97438 * 9 7 2 21 21 H 1.07998 * 120.04857 * 359.97438 * 13 12 10 22 22 H 1.08000 * 119.95915 * 179.97438 * 14 13 12 23 23 H 0.96700 * 114.00495 * 89.99522 * 16 15 14 24 24 H 1.07996 * 119.95728 * 179.72625 * 17 15 14 25 25 H 1.08007 * 120.04469 * 180.22249 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1016 1.6963 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3244 -2.3896 -0.0016 10 6 1.9982 -3.5568 -0.0016 11 8 3.2144 -3.5569 -0.0002 12 6 1.2607 -4.8341 -0.0022 13 6 1.9577 -6.0460 -0.0016 14 6 1.2654 -7.2361 -0.0027 15 6 -0.1247 -7.2338 -0.0049 16 8 -0.8033 -8.4091 -0.0064 17 6 -0.8218 -6.0311 -0.0107 18 6 -0.1372 -4.8364 -0.0038 19 1 -0.4850 0.8400 0.0004 20 1 0.3544 -2.3896 -0.0016 21 1 3.0377 -6.0486 -0.0012 22 1 1.8030 -8.1728 -0.0027 23 1 -1.0013 -8.7502 0.8765 24 1 -1.9018 -6.0337 -0.0168 25 1 -0.6796 -3.9024 -0.0047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714257.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = -59.472976 kcal Electronic energy + Delta-G solvation = -12608.622445 eV Core-core repulsion = 10166.113257 eV Total energy + Delta-G solvation = -2442.509188 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.57340 -38.05291 -36.01862 -34.11238 -31.59119 -30.55805 -29.48534 -25.22987 -22.80564 -22.25483 -19.64247 -18.41244 -18.02206 -16.61108 -15.44498 -15.13606 -14.72754 -14.20914 -13.86964 -13.59311 -13.23075 -12.93839 -12.03401 -11.76298 -11.64827 -11.58896 -11.13562 -10.53414 -10.37484 -10.17338 -9.64756 -8.75524 -8.54375 -8.28991 -8.10068 -6.59540 -3.92311 1.22236 1.65866 3.13479 3.19011 3.23429 3.54835 4.06314 4.29874 4.48851 4.86630 5.15544 5.19552 5.25869 5.66197 5.77086 5.97683 6.07457 6.28229 6.62902 6.64722 6.87006 7.03260 7.39547 7.75510 7.92632 8.46793 9.02373 9.38220 9.94090 10.57230 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.068885 B = 0.007260 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.378957 B = 3855.999226 C = 4249.980976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.024 3.976 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.295 4.295 8 H 0.108 0.892 9 N -0.542 5.542 10 C 0.463 3.537 11 O -0.598 6.598 12 C -0.100 4.100 13 C -0.064 4.064 14 C -0.151 4.151 15 C 0.095 3.905 16 O -0.502 6.502 17 C -0.147 4.147 18 C -0.090 4.090 19 H 0.277 0.723 20 H 0.394 0.606 21 H 0.136 0.864 22 H 0.126 0.874 23 H 0.385 0.615 24 H 0.127 0.873 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -9.401 1.641 10.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.180 4.180 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.425 4.425 8 H 0.126 0.874 9 N -0.176 5.176 10 C 0.252 3.748 11 O -0.486 6.486 12 C -0.104 4.104 13 C -0.083 4.083 14 C -0.170 4.170 15 C 0.050 3.950 16 O -0.311 6.311 17 C -0.166 4.166 18 C -0.109 4.109 19 H 0.087 0.913 20 H 0.229 0.771 21 H 0.154 0.846 22 H 0.144 0.856 23 H 0.240 0.760 24 H 0.145 0.855 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.804 -9.110 1.026 9.587 hybrid contribution -0.365 0.742 0.493 0.963 sum -3.170 -8.367 1.519 9.076 Atomic orbital electron populations 1.69585 1.06152 1.28921 1.48236 1.25397 0.95709 1.00142 0.96724 0.85820 0.78809 0.79774 0.79338 1.19613 1.20750 1.19613 1.19816 0.93764 0.82145 1.46762 0.87417 1.41917 1.09509 1.04769 1.61360 1.17671 0.87508 0.83274 0.86357 1.90600 1.13229 1.87039 1.57708 1.20416 0.93352 0.95126 1.01511 1.21108 1.00742 0.90349 0.96133 1.21294 0.93322 0.98583 1.03806 1.18581 0.89950 0.84913 1.01589 1.84765 1.76570 1.36532 1.33278 1.21263 1.00231 0.91731 1.03366 1.21324 0.93547 0.98082 0.97969 0.91325 0.77113 0.84626 0.85556 0.75950 0.85503 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.53 13.05 55.50 0.72 -22.80 15 2 C 0.02 0.62 5.50 -17.45 -0.10 0.53 15 3 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.30 -8.17 9.68 -14.99 -0.15 -8.32 15 8 H 0.11 3.10 7.15 -52.49 -0.38 2.72 15 9 N -0.54 -13.99 5.23 -11.93 -0.06 -14.05 15 10 C 0.46 11.61 7.71 -12.49 -0.10 11.51 15 11 O -0.60 -16.86 15.91 5.26 0.08 -16.78 15 12 C -0.10 -2.04 5.88 -104.96 -0.62 -2.65 15 13 C -0.06 -1.14 9.59 -39.20 -0.38 -1.52 15 14 C -0.15 -2.28 9.97 -39.50 -0.39 -2.67 15 15 C 0.09 1.38 6.71 -39.01 -0.26 1.12 15 16 O -0.50 -6.15 13.49 -18.84 -0.25 -6.40 15 17 C -0.15 -2.22 9.97 -39.49 -0.39 -2.62 15 18 C -0.09 -1.57 9.53 -39.20 -0.37 -1.95 15 19 H 0.28 6.88 8.31 -40.82 -0.34 6.54 15 20 H 0.39 9.58 5.92 -40.82 -0.24 9.34 15 21 H 0.14 2.44 7.64 -52.49 -0.40 2.04 15 22 H 0.13 1.57 8.06 -52.49 -0.42 1.15 15 23 H 0.39 2.73 9.06 45.56 0.41 3.15 15 24 H 0.13 1.61 8.06 -52.49 -0.42 1.19 15 25 H 0.13 2.25 6.40 -52.48 -0.34 1.91 15 LS Contribution 233.67 15.07 3.52 3.52 Total: -1.00 -31.47 233.67 -4.68 -36.15 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -0.92 Total: 11.48 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.75 Total: -6.57 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.66 Total: -36.86 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.17 Total: -23.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.47 -4.68 -36.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714257.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.319 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds