Wall clock time and date at job start Mon Mar 30 2020 02:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86810 * 119.99559 * 2 1 4 4 H 1.48495 * 109.47208 * 269.99889 * 3 2 1 5 5 H 1.48497 * 109.47013 * 30.00250 * 3 2 1 6 6 H 1.48504 * 109.46804 * 149.99753 * 3 2 1 7 7 C 1.38784 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00251 * 180.02562 * 7 2 1 9 9 O 1.34863 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.34785 * 117.00246 * 179.97438 * 9 7 2 11 11 O 1.21550 * 119.99945 * 0.02562 * 10 9 7 12 12 C 1.47331 * 119.99939 * 180.02562 * 10 9 7 13 13 C 1.39888 * 120.07343 * 180.02562 * 12 10 9 14 14 C 1.37102 * 119.92173 * 180.02562 * 13 12 10 15 15 C 1.39250 * 120.07484 * 359.97438 * 14 13 12 16 16 N 1.39017 * 119.91936 * 179.97438 * 15 14 13 17 17 C 1.39247 * 120.15453 * 0.25992 * 15 14 13 18 18 C 1.37098 * 120.07516 * 359.48242 * 17 15 14 19 19 H 0.96993 * 120.00330 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.03864 * 359.97438 * 13 12 10 21 21 H 1.07995 * 119.96103 * 179.97438 * 14 13 12 22 22 H 0.97001 * 120.00489 * 0.02562 * 16 15 14 23 23 H 0.97005 * 119.99786 * 179.72469 * 16 15 14 24 24 H 1.07996 * 119.95935 * 179.74647 * 17 15 14 25 25 H 1.08009 * 120.03890 * 180.25571 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6179 0.0000 4 1 2.4957 2.0466 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5458 1.4404 0.7001 7 6 2.0083 -1.2018 0.0005 8 1 3.0884 -1.2018 0.0010 9 8 1.3341 -2.3699 0.0005 10 6 2.0683 -3.5002 0.0005 11 8 3.2821 -3.4365 0.0010 12 6 1.3994 -4.8130 0.0000 13 6 2.1599 -5.9871 0.0005 14 6 1.5343 -7.2071 -0.0006 15 6 0.1436 -7.2782 -0.0016 16 7 -0.4874 -8.5169 -0.0033 17 6 -0.6164 -6.1114 -0.0071 18 6 0.0026 -4.8882 -0.0007 19 1 -0.4850 0.8400 0.0004 20 1 3.2385 -5.9327 0.0009 21 1 2.1207 -8.1139 -0.0006 22 1 0.0409 -9.3304 -0.0033 23 1 -1.4561 -8.5677 0.0000 24 1 -1.6948 -6.1702 -0.0121 25 1 -0.5875 -3.9835 -0.0008 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041041683.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:17 Heat of formation + Delta-G solvation = -57.671746 kcal Electronic energy + Delta-G solvation = -12619.165724 eV Core-core repulsion = 10176.734643 eV Total energy + Delta-G solvation = -2442.431081 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.40518 -38.22793 -35.13973 -34.13205 -32.08956 -30.64581 -28.76332 -25.34045 -22.76678 -22.34157 -20.02536 -17.66436 -17.25144 -16.74146 -16.39691 -14.99311 -14.36536 -14.34438 -13.87317 -13.59536 -13.04747 -12.92114 -12.66539 -11.84593 -11.43545 -11.21833 -10.63546 -10.57552 -10.39275 -10.12864 -9.74068 -8.95355 -8.67772 -8.52378 -7.35121 -6.37190 -4.00254 1.53904 1.83000 3.18275 3.22628 3.29112 3.65850 3.89958 4.02147 4.52129 4.74125 5.19729 5.23641 5.25248 5.78608 5.86196 5.98477 6.32298 6.47543 6.54207 6.92644 7.09924 7.19485 7.45989 7.58691 7.74720 8.01812 8.81397 9.12255 9.95410 10.81240 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.070684 B = 0.007334 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.032754 B = 3816.926069 C = 4203.115976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.375 4.375 8 H 0.096 0.904 9 O -0.210 6.210 10 C 0.442 3.558 11 O -0.561 6.561 12 C -0.149 4.149 13 C -0.021 4.021 14 C -0.213 4.213 15 C 0.225 3.775 16 N -0.876 5.876 17 C -0.212 4.212 18 C -0.021 4.021 19 H 0.269 0.731 20 H 0.131 0.869 21 H 0.120 0.880 22 H 0.396 0.604 23 H 0.397 0.603 24 H 0.121 0.879 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -12.611 0.007 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.451 4.451 8 H 0.113 0.887 9 O -0.117 6.117 10 C 0.291 3.709 11 O -0.460 6.460 12 C -0.153 4.153 13 C -0.040 4.040 14 C -0.236 4.236 15 C 0.120 3.880 16 N -0.414 5.414 17 C -0.234 4.234 18 C -0.040 4.040 19 H 0.079 0.921 20 H 0.149 0.851 21 H 0.138 0.862 22 H 0.224 0.776 23 H 0.225 0.775 24 H 0.139 0.861 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.486 -12.364 0.009 12.612 hybrid contribution 0.192 0.421 -0.003 0.463 sum -2.294 -11.943 0.006 12.162 Atomic orbital electron populations 1.69980 1.05995 1.27646 1.46523 1.25335 0.95821 0.98824 0.96400 0.85672 0.79066 0.79756 0.78703 1.19906 1.20364 1.19090 1.21270 0.92486 0.79954 1.51380 0.88651 1.83909 1.39092 1.13219 1.75530 1.20755 0.85807 0.85507 0.78849 1.90609 1.15320 1.88052 1.52002 1.19170 0.93472 0.91484 1.11139 1.20835 1.00205 0.90360 0.92592 1.20286 0.92134 0.97897 1.13282 1.17944 0.91938 0.85951 0.92181 1.42343 1.09215 1.04897 1.84984 1.20405 0.99241 0.91146 1.12621 1.21250 0.93797 0.97846 0.91139 0.92107 0.85070 0.86156 0.77643 0.77548 0.86076 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.57 13.67 55.49 0.76 -24.81 15 2 C 0.04 1.15 5.50 -17.52 -0.10 1.05 15 3 Si 0.94 21.67 29.55 -169.99 -5.02 16.65 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.37 -11.41 9.65 30.93 0.30 -11.11 15 8 H 0.10 2.92 6.86 -52.48 -0.36 2.56 15 9 O -0.21 -6.26 8.98 -21.81 -0.20 -6.46 15 10 C 0.44 11.85 7.82 34.43 0.27 12.12 15 11 O -0.56 -16.08 15.58 -19.31 -0.30 -16.38 15 12 C -0.15 -3.21 5.88 -104.96 -0.62 -3.83 15 13 C -0.02 -0.38 9.56 -39.38 -0.38 -0.76 15 14 C -0.21 -3.11 9.85 -39.62 -0.39 -3.50 15 15 C 0.22 3.08 6.75 -83.85 -0.57 2.51 15 16 N -0.88 -8.12 9.05 32.41 0.29 -7.82 15 17 C -0.21 -3.23 9.85 -39.62 -0.39 -3.62 15 18 C -0.02 -0.41 9.58 -39.38 -0.38 -0.78 15 19 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 20 H 0.13 2.35 7.64 -52.49 -0.40 1.95 15 21 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 22 H 0.40 2.82 8.83 -40.82 -0.36 2.46 15 23 H 0.40 2.92 8.83 -40.82 -0.36 2.56 15 24 H 0.12 1.53 8.06 -52.49 -0.42 1.10 15 25 H 0.14 2.83 7.60 -52.48 -0.40 2.43 15 LS Contribution 236.78 15.07 3.57 3.57 Total: -1.00 -34.24 236.78 -5.01 -39.25 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -1.86 Total: 3.91 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.25 Total: -7.92 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 1.05 Total: -32.63 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.50 Total: -22.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -34.24 -5.01 -39.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041041683.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.421 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds