Wall clock time and date at job start Mon Mar 30 2020 02:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86810 * 119.99559 * 2 1 4 4 H 1.48495 * 109.47208 * 269.99889 * 3 2 1 5 5 H 1.48497 * 109.47013 * 30.00250 * 3 2 1 6 6 H 1.48504 * 109.46804 * 149.99753 * 3 2 1 7 7 C 1.38784 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00251 * 180.02562 * 7 2 1 9 9 O 1.34863 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.34785 * 117.00246 * 179.97438 * 9 7 2 11 11 O 1.21550 * 119.99945 * 0.02562 * 10 9 7 12 12 C 1.47331 * 119.99939 * 180.02562 * 10 9 7 13 13 C 1.39888 * 120.07343 * 180.02562 * 12 10 9 14 14 C 1.37102 * 119.92173 * 180.02562 * 13 12 10 15 15 C 1.39250 * 120.07484 * 359.97438 * 14 13 12 16 16 N 1.39017 * 119.91936 * 179.97438 * 15 14 13 17 17 C 1.39247 * 120.15453 * 0.25992 * 15 14 13 18 18 C 1.37098 * 120.07516 * 359.48242 * 17 15 14 19 19 H 0.96993 * 120.00330 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.03864 * 359.97438 * 13 12 10 21 21 H 1.07995 * 119.96103 * 179.97438 * 14 13 12 22 22 H 0.97001 * 120.00489 * 0.02562 * 16 15 14 23 23 H 0.97005 * 119.99786 * 179.72469 * 16 15 14 24 24 H 1.07996 * 119.95935 * 179.74647 * 17 15 14 25 25 H 1.08009 * 120.03890 * 180.25571 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6179 0.0000 4 1 2.4957 2.0466 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5458 1.4404 0.7001 7 6 2.0083 -1.2018 0.0005 8 1 3.0884 -1.2018 0.0010 9 8 1.3341 -2.3699 0.0005 10 6 2.0683 -3.5002 0.0005 11 8 3.2821 -3.4365 0.0010 12 6 1.3994 -4.8130 0.0000 13 6 2.1599 -5.9871 0.0005 14 6 1.5343 -7.2071 -0.0006 15 6 0.1436 -7.2782 -0.0016 16 7 -0.4874 -8.5169 -0.0033 17 6 -0.6164 -6.1114 -0.0071 18 6 0.0026 -4.8882 -0.0007 19 1 -0.4850 0.8400 0.0004 20 1 3.2385 -5.9327 0.0009 21 1 2.1207 -8.1139 -0.0006 22 1 0.0409 -9.3304 -0.0033 23 1 -1.4561 -8.5677 0.0000 24 1 -1.6948 -6.1702 -0.0121 25 1 -0.5875 -3.9835 -0.0008 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041041683.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:17 Heat of formation + Delta-G solvation = -82.542431 kcal Electronic energy + Delta-G solvation = -12620.244198 eV Core-core repulsion = 10176.734643 eV Total energy + Delta-G solvation = -2443.509555 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.17004 -39.87099 -37.21485 -35.41826 -34.28704 -31.98160 -30.15137 -27.45251 -24.38502 -23.66738 -21.75086 -19.86132 -18.94721 -18.01423 -17.55718 -16.95355 -16.49179 -16.20944 -15.37064 -14.92045 -14.49133 -14.33235 -14.19025 -13.68717 -13.20108 -13.18037 -12.41593 -12.19027 -12.09415 -11.83121 -11.56331 -11.06991 -10.69318 -10.00376 -8.54431 -8.52243 -6.31449 0.05295 0.52208 1.33739 1.38890 1.51829 1.89908 2.13923 2.85140 2.87144 2.98398 3.12162 3.91858 4.07078 4.43715 4.45888 4.72296 4.80009 5.10944 5.14861 5.25902 5.46969 5.68043 5.81293 5.84023 6.52516 6.66494 6.90383 7.00606 7.79238 8.66891 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.070684 B = 0.007334 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.032754 B = 3816.926069 C = 4203.115976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.004 4.004 3 Si 1.020 2.980 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.265 1.265 7 C -0.423 4.423 8 H 0.079 0.921 9 O -0.238 6.238 10 C 0.438 3.562 11 O -0.593 6.593 12 C -0.201 4.201 13 C -0.021 4.021 14 C -0.205 4.205 15 C 0.254 3.746 16 N -0.847 5.847 17 C -0.210 4.210 18 C -0.028 4.028 19 H 0.280 0.720 20 H 0.125 0.875 21 H 0.162 0.838 22 H 0.413 0.587 23 H 0.412 0.588 24 H 0.153 0.847 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.490 -14.757 -0.016 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.205 4.205 3 Si 0.838 3.162 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.189 1.189 7 C -0.499 4.499 8 H 0.097 0.903 9 O -0.147 6.147 10 C 0.290 3.710 11 O -0.494 6.494 12 C -0.204 4.204 13 C -0.040 4.040 14 C -0.228 4.228 15 C 0.144 3.856 16 N -0.385 5.385 17 C -0.232 4.232 18 C -0.047 4.047 19 H 0.089 0.911 20 H 0.143 0.857 21 H 0.179 0.821 22 H 0.244 0.756 23 H 0.243 0.757 24 H 0.171 0.829 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.399 -14.596 -0.017 14.987 hybrid contribution 0.356 0.740 0.004 0.821 sum -3.043 -13.856 -0.013 14.186 Atomic orbital electron populations 1.70064 1.07629 1.29438 1.46683 1.26579 0.96965 1.02268 0.94643 0.84604 0.77642 0.74320 0.79600 1.18331 1.18072 1.18892 1.21484 0.92248 0.81350 1.54792 0.90284 1.83935 1.39843 1.13949 1.76930 1.21896 0.85839 0.86702 0.76599 1.90542 1.16719 1.88697 1.53402 1.19034 0.94705 0.89525 1.17128 1.20881 0.99918 0.90665 0.92569 1.20600 0.92895 0.97661 1.11600 1.17983 0.91692 0.87061 0.88879 1.42351 1.10435 1.03834 1.81862 1.20607 1.00885 0.90010 1.11705 1.21079 0.92667 0.98839 0.92153 0.91090 0.85703 0.82097 0.75586 0.75728 0.82927 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.91 13.67 21.63 0.30 -54.61 15 2 C 0.00 -0.26 5.50 84.88 0.47 0.20 15 3 Si 1.02 45.13 29.55 68.60 2.03 47.16 15 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 15 5 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 6 H -0.26 -11.51 7.11 99.48 0.71 -10.81 15 7 C -0.42 -27.35 9.65 67.95 0.66 -26.69 15 8 H 0.08 5.19 6.86 -2.91 -0.02 5.17 15 9 O -0.24 -15.23 8.98 10.71 0.10 -15.13 15 10 C 0.44 25.18 7.82 70.21 0.55 25.73 15 11 O -0.59 -36.31 15.58 19.67 0.31 -36.01 15 12 C -0.20 -8.97 5.88 -20.09 -0.12 -9.09 15 13 C -0.02 -0.76 9.56 22.40 0.21 -0.54 15 14 C -0.21 -5.26 9.85 22.25 0.22 -5.04 15 15 C 0.25 5.84 6.75 38.49 0.26 6.10 15 16 N -0.85 -10.66 9.05 -51.36 -0.46 -11.12 15 17 C -0.21 -5.86 9.85 22.24 0.22 -5.64 15 18 C -0.03 -1.09 9.58 22.40 0.21 -0.88 15 19 H 0.28 15.34 8.31 -92.71 -0.77 14.57 15 20 H 0.13 4.55 7.64 -2.91 -0.02 4.53 15 21 H 0.16 2.84 8.06 -2.91 -0.02 2.82 15 22 H 0.41 3.20 8.83 -92.71 -0.82 2.38 15 23 H 0.41 3.54 8.83 -92.70 -0.82 2.72 15 24 H 0.15 3.27 8.06 -2.91 -0.02 3.25 15 25 H 0.11 4.97 7.60 -2.91 -0.02 4.95 15 Total: -1.00 -80.30 236.78 4.54 -75.76 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -0.40 Total: 9.81 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 2.68 Total: -15.85 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -0.17 Total: -65.73 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: 0.40 Total: -51.14 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -80.30 4.54 -75.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041041683.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.785 kcal (2) G-P(sol) polarization free energy of solvation -80.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds