Wall clock time and date at job start Mon Mar 30 2020 02:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00184 * 2 1 4 4 H 1.48505 * 109.46949 * 270.00049 * 3 2 1 5 5 H 1.48505 * 109.47088 * 29.99908 * 3 2 1 6 6 H 1.48496 * 109.47500 * 149.99902 * 3 2 1 7 7 C 1.38817 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99812 * 359.97438 * 7 2 1 9 9 O 1.34849 * 120.00291 * 180.02562 * 7 2 1 10 10 C 1.34727 * 117.00188 * 179.97438 * 9 7 2 11 11 O 1.21503 * 120.00169 * 359.97438 * 10 9 7 12 12 C 1.47687 * 120.00250 * 179.97438 * 10 9 7 13 13 C 1.39712 * 120.11424 * 359.97438 * 12 10 9 14 14 C 1.37957 * 119.99293 * 179.97438 * 13 12 10 15 15 C 1.38261 * 120.23596 * 0.27989 * 14 13 12 16 16 C 1.39004 * 120.24059 * 359.44944 * 15 14 13 17 17 N 1.39705 * 120.00281 * 180.25781 * 16 15 14 18 18 C 1.38654 * 119.99543 * 0.54781 * 16 15 14 19 19 H 0.96994 * 119.99890 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.00341 * 0.02562 * 13 12 10 21 21 H 1.08002 * 119.87741 * 179.97438 * 14 13 12 22 22 H 1.08001 * 119.87911 * 179.69907 * 15 14 13 23 23 H 0.97000 * 120.00128 * 180.29676 * 17 16 15 24 24 H 0.96998 * 119.99562 * 0.28688 * 17 16 15 25 25 H 1.07999 * 120.11799 * 179.75564 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0082 -1.2022 0.0005 8 1 1.4682 -2.1374 0.0014 9 8 3.3567 -1.2022 0.0011 10 6 3.9684 -2.4026 0.0021 11 8 3.3067 -3.4217 0.0030 12 6 5.4432 -2.4800 0.0022 13 6 6.2065 -1.3098 0.0006 14 6 7.5840 -1.3849 0.0012 15 6 8.2142 -2.6156 -0.0025 16 6 7.4643 -3.7861 0.0047 17 7 8.1062 -5.0269 0.0063 18 6 6.0793 -3.7220 0.0041 19 1 -0.4850 0.8400 0.0004 20 1 5.7182 -0.3465 -0.0003 21 1 8.1723 -0.4792 -0.0005 22 1 9.2929 -2.6677 -0.0070 23 1 7.5830 -5.8437 0.0070 24 1 9.0752 -5.0716 0.0067 25 1 5.4948 -4.6301 0.0057 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041041898.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:28 Heat of formation + Delta-G solvation = -53.608266 kcal Electronic energy + Delta-G solvation = -12704.368227 eV Core-core repulsion = 10262.113352 eV Total energy + Delta-G solvation = -2442.254876 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.59277 -38.38751 -35.31624 -34.31394 -32.32671 -30.77629 -28.50773 -25.78188 -23.33017 -21.88546 -20.02895 -18.00981 -17.45540 -16.58912 -15.98014 -15.47675 -14.68321 -14.65888 -14.01442 -13.55548 -13.38082 -12.96384 -12.44575 -12.15843 -11.45142 -11.32018 -10.97532 -10.60794 -10.40711 -10.31792 -9.70660 -9.19382 -8.71650 -8.65669 -7.43193 -6.39645 -4.10715 1.24352 1.80548 3.19262 3.24679 3.37404 3.49534 3.81811 4.22503 4.28028 4.34409 5.12483 5.13888 5.22907 5.68005 5.71157 5.76889 6.05714 6.27224 6.50864 6.76295 6.86841 7.01730 7.54719 7.72574 7.78826 8.02601 8.63381 8.98688 9.69246 10.68367 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.052922 B = 0.008746 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.957366 B = 3200.515946 C = 3719.629694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.374 4.374 8 H 0.111 0.889 9 O -0.241 6.241 10 C 0.444 3.556 11 O -0.538 6.538 12 C -0.042 4.042 13 C -0.133 4.133 14 C -0.085 4.085 15 C -0.185 4.185 16 C 0.200 3.800 17 N -0.882 5.882 18 C -0.145 4.145 19 H 0.281 0.719 20 H 0.132 0.868 21 H 0.124 0.876 22 H 0.118 0.882 23 H 0.398 0.602 24 H 0.395 0.605 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.513 -2.903 0.020 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.450 4.450 8 H 0.128 0.872 9 O -0.149 6.149 10 C 0.292 3.708 11 O -0.434 6.434 12 C -0.044 4.044 13 C -0.153 4.153 14 C -0.104 4.104 15 C -0.208 4.208 16 C 0.097 3.903 17 N -0.422 5.422 18 C -0.168 4.168 19 H 0.091 0.909 20 H 0.150 0.850 21 H 0.142 0.858 22 H 0.136 0.864 23 H 0.226 0.774 24 H 0.223 0.777 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.095 -2.968 0.023 16.367 hybrid contribution 0.318 0.361 -0.012 0.481 sum 16.414 -2.607 0.012 16.619 Atomic orbital electron populations 1.69591 1.05788 1.28576 1.46866 1.24577 0.95028 0.98783 0.95520 0.86217 0.80443 0.81302 0.79058 1.19697 1.20690 1.18131 1.20724 0.76226 0.97065 1.50945 0.87180 1.83537 1.23844 1.31067 1.76468 1.20566 0.87891 0.82625 0.79759 1.90655 1.66574 1.36074 1.50108 1.19094 0.90620 0.93631 1.01048 1.21315 0.93575 0.98365 1.02078 1.20812 0.94210 0.96939 0.98443 1.20651 0.98998 0.91426 1.09728 1.17556 0.91253 0.86257 0.95233 1.42369 1.08838 1.04747 1.86273 1.20606 0.92027 0.97789 1.06362 0.90903 0.84961 0.85802 0.86371 0.77434 0.77694 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.96 55.49 0.77 -25.07 15 2 C 0.07 1.88 5.50 -17.52 -0.10 1.79 15 3 Si 0.90 21.44 28.62 -169.99 -4.86 16.57 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.26 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.37 -11.34 10.11 30.95 0.31 -11.02 15 8 H 0.11 3.66 7.09 -52.49 -0.37 3.29 15 9 O -0.24 -6.59 7.82 -21.61 -0.17 -6.76 15 10 C 0.44 11.28 7.84 34.59 0.27 11.56 15 11 O -0.54 -15.06 15.59 -19.27 -0.30 -15.36 15 12 C -0.04 -0.85 5.87 -105.00 -0.62 -1.46 15 13 C -0.13 -2.34 9.61 -39.13 -0.38 -2.71 15 14 C -0.09 -1.19 10.02 -39.68 -0.40 -1.58 15 15 C -0.19 -2.37 9.89 -39.29 -0.39 -2.76 15 16 C 0.20 2.77 6.75 -83.83 -0.57 2.20 15 17 N -0.88 -8.72 9.09 32.39 0.29 -8.42 15 18 C -0.14 -2.51 9.44 -38.94 -0.37 -2.88 15 19 H 0.28 7.59 8.31 -40.82 -0.34 7.25 15 20 H 0.13 2.37 7.60 -52.49 -0.40 1.97 15 21 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 22 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15 23 H 0.40 3.47 8.84 -40.82 -0.36 3.11 15 24 H 0.40 2.87 8.84 -40.82 -0.36 2.51 15 25 H 0.13 2.30 7.65 -52.49 -0.40 1.90 15 LS Contribution 235.86 15.07 3.55 3.55 Total: -1.00 -33.26 235.86 -4.81 -38.07 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -1.87 Total: 4.28 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.22 Total: -6.88 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 1.07 Total: -33.49 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.47 Total: -22.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.86 Total: 16.57 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -33.26 -4.81 -38.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041041898.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.537 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds