Wall clock time and date at job start Mon Mar 30 2020 02:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34703 * 117.00273 * 2 1 4 4 O 1.21469 * 119.99705 * 359.97438 * 3 2 1 5 5 C 1.47755 * 119.99955 * 179.97438 * 3 2 1 6 6 C 1.39936 * 120.44260 * 359.97438 * 5 3 2 7 7 N 1.31841 * 121.11549 * 180.02562 * 6 5 3 8 8 C 1.31565 * 122.16987 * 359.97438 * 7 6 5 9 9 C 1.40776 * 120.72921 * 359.97438 * 8 7 6 10 10 C 1.41448 * 120.59579 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99700 * 330.48446 * 10 9 8 12 12 C 1.39934 * 119.99841 * 150.47612 * 10 9 8 13 13 N 1.30829 * 119.99910 * 161.75783 * 12 10 9 14 14 Si 1.86807 * 120.00368 * 341.75854 * 12 10 9 15 15 H 1.48499 * 109.47164 * 95.40646 * 14 12 10 16 16 H 1.48496 * 109.47047 * 215.40847 * 14 12 10 17 17 H 1.48503 * 109.46569 * 335.40739 * 14 12 10 18 18 C 1.39483 * 120.44090 * 180.02562 * 5 3 2 19 19 H 1.08999 * 109.46457 * 60.00039 * 1 2 3 20 20 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47193 * 300.00218 * 1 2 3 22 22 H 1.07998 * 119.43630 * 0.03014 * 6 5 3 23 23 H 1.07997 * 119.63762 * 179.97438 * 8 7 6 24 24 H 0.97009 * 120.00016 * 180.02562 * 13 12 10 25 25 H 1.07999 * 120.96922 * 359.97438 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5392 1.2774 0.0006 6 6 4.3103 0.1097 0.0017 7 7 5.6277 0.1632 0.0027 8 6 6.2824 1.3043 0.0022 9 6 5.5908 2.5305 0.0001 10 6 6.2976 3.7557 0.0002 11 1 7.2718 3.8171 0.4625 12 6 5.7347 4.8882 -0.5989 13 7 6.1905 6.0787 -0.3046 14 14 4.3326 4.7002 -1.8188 15 1 3.0370 4.8757 -1.1147 16 1 4.4610 5.7281 -2.8828 17 1 4.3852 3.3472 -2.4286 18 6 4.1821 2.5153 0.0011 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 3.8180 -0.8515 0.0016 23 1 7.3624 1.3004 0.0035 24 1 5.8000 6.8638 -0.7196 25 1 3.6164 3.4353 0.0007 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368474.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:58 Heat of formation + Delta-G solvation = -83.060259 kcal Electronic energy + Delta-G solvation = -12984.742129 eV Core-core repulsion = 10541.210119 eV Total energy + Delta-G solvation = -2443.532010 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.64401 -40.19306 -37.53937 -36.00130 -33.38475 -32.84282 -28.74338 -27.55994 -25.25480 -23.91963 -21.90594 -19.88358 -18.45667 -18.36332 -17.42381 -17.40994 -16.98802 -16.40265 -14.99604 -14.90271 -14.74310 -14.17134 -14.13098 -13.84690 -13.32966 -13.04564 -12.82560 -12.59739 -11.99407 -11.84969 -11.77740 -11.48078 -10.56293 -10.20388 -9.93224 -9.07297 -6.68314 -0.29659 0.53826 1.19458 1.22388 1.33586 1.55480 1.65933 1.97315 2.49367 3.31995 3.69395 3.99726 4.11726 4.28616 4.32317 4.33756 4.48324 4.67094 4.72959 5.10045 5.15908 5.26701 5.50498 5.69332 6.09733 6.29610 6.57471 6.62471 7.31418 7.98772 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.034721 B = 0.012533 C = 0.009767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.227952 B = 2233.600097 C = 2866.187579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.349 6.349 3 C 0.519 3.481 4 O -0.542 6.542 5 C -0.149 4.149 6 C 0.034 3.966 7 N -0.473 5.473 8 C 0.038 3.962 9 C 0.021 3.979 10 C -0.456 4.456 11 H 0.087 0.913 12 C 0.062 3.938 13 N -0.821 5.821 14 Si 0.938 3.062 15 H -0.270 1.270 16 H -0.261 1.261 17 H -0.258 1.258 18 C -0.162 4.162 19 H 0.061 0.939 20 H 0.143 0.857 21 H 0.062 0.938 22 H 0.176 0.824 23 H 0.163 0.837 24 H 0.300 0.700 25 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -8.077 -1.541 11.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.365 3.635 4 O -0.434 6.434 5 C -0.152 4.152 6 C -0.122 4.122 7 N -0.180 5.180 8 C -0.124 4.124 9 C 0.016 3.984 10 C -0.485 4.485 11 H 0.105 0.895 12 C -0.156 4.156 13 N -0.445 5.445 14 Si 0.762 3.238 15 H -0.196 1.196 16 H -0.187 1.187 17 H -0.182 1.182 18 C -0.188 4.188 19 H 0.080 0.920 20 H 0.161 0.839 21 H 0.081 0.919 22 H 0.193 0.807 23 H 0.180 0.820 24 H 0.111 0.889 25 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.756 -8.284 -1.547 11.453 hybrid contribution -1.105 1.448 -0.322 1.850 sum -8.861 -6.836 -1.869 11.346 Atomic orbital electron populations 1.23661 0.74149 1.06230 1.02596 1.86552 1.25397 1.30808 1.83718 1.21292 0.88991 0.81633 0.71541 1.90772 1.67405 1.37320 1.47876 1.19964 0.89605 0.96317 1.09309 1.22701 0.88969 0.96828 1.03712 1.67259 1.09831 1.29958 1.10915 1.23227 1.00233 0.86520 1.02461 1.18678 0.91373 0.95587 0.92748 1.19447 1.04981 0.91733 1.32366 0.89543 1.26555 0.98040 0.94110 0.96933 1.69662 1.39226 0.99829 1.35801 0.85877 0.78710 0.79787 0.79392 1.19553 1.18662 1.18229 1.21640 0.94843 0.96107 1.06188 0.92010 0.83918 0.91893 0.80716 0.81973 0.88939 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.57 113.37 1.20 1.77 15 2 O -0.35 -10.83 9.83 -56.13 -0.55 -11.38 15 3 C 0.52 20.68 7.90 70.34 0.56 21.24 15 4 O -0.54 -24.18 16.19 19.94 0.32 -23.85 15 5 C -0.15 -6.47 5.88 -20.05 -0.12 -6.59 15 6 C 0.03 1.36 10.78 85.10 0.92 2.27 15 7 N -0.47 -19.97 10.32 -192.61 -1.99 -21.96 15 8 C 0.04 1.67 10.96 85.35 0.94 2.60 15 9 C 0.02 1.02 5.11 -21.22 -0.11 0.91 15 10 C -0.46 -23.70 9.60 23.47 0.23 -23.47 15 11 H 0.09 4.61 8.06 -2.91 -0.02 4.59 15 12 C 0.06 3.19 5.42 85.25 0.46 3.65 15 13 N -0.82 -42.41 13.93 21.82 0.30 -42.10 15 14 Si 0.94 42.59 24.54 68.60 1.68 44.28 15 15 H -0.27 -12.65 6.70 99.48 0.67 -11.98 15 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 15 17 H -0.26 -12.07 6.86 99.48 0.68 -11.39 15 18 C -0.16 -7.90 6.84 23.22 0.16 -7.74 15 19 H 0.06 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.14 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.18 5.73 7.60 -2.91 -0.02 5.70 15 23 H 0.16 6.39 8.06 -2.91 -0.02 6.36 15 24 H 0.30 13.93 8.30 -92.70 -0.77 13.17 15 25 H 0.11 5.62 4.47 -2.91 -0.01 5.61 15 Total: -1.00 -59.11 229.42 5.14 -53.97 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.15 Total: 6.40 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 4.23 Total: -5.35 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -1.68 Total: -64.06 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.23 Total: -35.23 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.68 Total: 44.28 kcal Total: -59.11 5.14 -53.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368474.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.095 kcal (2) G-P(sol) polarization free energy of solvation -59.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds