Wall clock time and date at job start Mon Mar 30 2020 02:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34672 * 117.00272 * 2 1 4 4 O 1.21432 * 119.99758 * 359.97438 * 3 2 1 5 5 C 1.48024 * 120.00206 * 180.02562 * 3 2 1 6 6 C 1.40192 * 120.84557 * 359.97438 * 5 3 2 7 7 C 1.38641 * 119.39963 * 180.02562 * 6 5 3 8 8 N 1.31391 * 121.15941 * 359.97438 * 7 6 5 9 9 C 1.33564 * 121.84506 * 359.73034 * 8 7 6 10 10 C 1.41380 * 119.76322 * 180.29084 * 9 8 7 11 11 H 1.08004 * 119.99738 * 180.24109 * 10 9 8 12 12 C 1.40063 * 120.00641 * 0.24269 * 10 9 8 13 13 N 1.30726 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00561 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46613 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47033 * 119.99935 * 14 12 10 17 17 H 1.48497 * 109.47023 * 239.99947 * 14 12 10 18 18 C 1.39388 * 120.84528 * 179.97438 * 5 3 2 19 19 H 1.08997 * 109.47190 * 60.00170 * 1 2 3 20 20 H 1.08994 * 109.47592 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47206 * 300.00162 * 1 2 3 22 22 H 1.08006 * 120.29788 * 359.97438 * 6 5 3 23 23 H 1.07998 * 119.41990 * 179.97438 * 7 6 5 24 24 H 0.96994 * 120.00271 * 180.02562 * 13 12 10 25 25 H 1.08002 * 120.58764 * 359.94917 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4021 2.2183 -0.0005 5 6 3.5416 1.2774 -0.0006 6 6 4.3224 0.1130 -0.0006 7 6 5.7047 0.2205 -0.0006 8 7 6.2953 1.3941 -0.0011 9 6 5.5986 2.5337 -0.0069 10 6 6.2797 3.7726 -0.0135 11 1 5.7201 4.6964 -0.0143 12 6 7.6800 3.8022 -0.0189 13 7 8.3573 2.6841 -0.0184 14 14 8.5798 5.4392 -0.0268 15 1 7.5912 6.5473 -0.0266 16 1 9.4363 5.5390 1.1822 17 1 9.4270 5.5324 -1.2427 18 6 4.1927 2.5098 -0.0011 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 3.8514 -0.8589 0.0002 23 1 6.3065 -0.6763 -0.0002 24 1 9.3270 2.7044 -0.0218 25 1 3.6273 3.4300 -0.0020 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369662.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:01 Heat of formation + Delta-G solvation = -55.260579 kcal Electronic energy + Delta-G solvation = -12729.912348 eV Core-core repulsion = 10287.585823 eV Total energy + Delta-G solvation = -2442.326525 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.89922 -38.03594 -35.93028 -33.74704 -31.16901 -30.14268 -27.50883 -25.82220 -23.48968 -21.47671 -20.40207 -18.00868 -16.85745 -16.09119 -15.90703 -15.18298 -14.34378 -14.12385 -13.85856 -13.06856 -12.84185 -12.56357 -12.17594 -11.86499 -11.29202 -11.27426 -10.89361 -10.57217 -10.48054 -10.08365 -9.99604 -9.50939 -8.50517 -7.81107 -7.75334 -6.53578 -4.64664 1.82193 2.62065 3.05169 3.08507 3.09801 3.18639 3.56189 3.88087 4.64555 5.27116 5.33689 5.36070 5.67659 5.73459 5.94699 6.32104 6.51422 6.63118 6.70614 6.94771 7.10199 7.31707 7.37760 7.74576 8.09928 8.31674 8.48491 8.74764 9.92841 10.18850 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.063718 B = 0.007963 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.331683 B = 3515.418011 C = 3939.596275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.520 6.520 5 C -0.066 4.066 6 C -0.276 4.276 7 C 0.121 3.879 8 N -0.470 5.470 9 C 0.245 3.755 10 C -0.422 4.422 11 H 0.089 0.911 12 C 0.067 3.933 13 N -0.711 5.711 14 Si 0.911 3.089 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.272 1.272 18 C -0.199 4.199 19 H 0.059 0.941 20 H 0.096 0.904 21 H 0.058 0.942 22 H 0.110 0.890 23 H 0.127 0.873 24 H 0.275 0.725 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -2.955 0.002 6.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.360 3.640 4 O -0.409 6.409 5 C -0.073 4.073 6 C -0.299 4.299 7 C -0.044 4.044 8 N -0.183 5.183 9 C 0.121 3.879 10 C -0.453 4.453 11 H 0.107 0.893 12 C -0.159 4.159 13 N -0.332 5.332 14 Si 0.735 3.265 15 H -0.182 1.182 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.223 4.223 19 H 0.077 0.923 20 H 0.115 0.885 21 H 0.077 0.923 22 H 0.128 0.872 23 H 0.145 0.855 24 H 0.086 0.914 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.632 -2.676 0.004 5.350 hybrid contribution -0.821 0.573 -0.005 1.001 sum -5.453 -2.103 -0.001 5.844 Atomic orbital electron populations 1.23167 0.77440 1.03057 1.02177 1.86604 1.22384 1.33553 1.84603 1.21879 0.89915 0.80656 0.71595 1.90739 1.67133 1.36222 1.46801 1.18921 0.86673 0.95751 1.05984 1.21544 0.95315 0.96382 1.16642 1.22567 0.90872 0.96553 0.94410 1.68646 1.37715 0.96517 1.15470 1.18586 0.87168 0.92569 0.89606 1.19719 0.91348 0.92371 1.41892 0.89339 1.26098 0.98196 0.98056 0.93581 1.70117 1.07896 1.27444 1.27753 0.86204 0.79728 0.81907 0.78663 1.18245 1.19696 1.19703 1.22025 0.95842 0.95299 1.09175 0.92268 0.88518 0.92275 0.87231 0.85526 0.91382 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.53 15 2 O -0.35 -6.38 9.91 -40.42 -0.40 -6.78 15 3 C 0.51 10.95 7.92 34.74 0.28 11.23 15 4 O -0.52 -11.80 16.22 -19.21 -0.31 -12.11 15 5 C -0.07 -1.55 5.90 -104.72 -0.62 -2.17 15 6 C -0.28 -6.12 9.72 -38.70 -0.38 -6.49 15 7 C 0.12 2.84 11.17 -17.59 -0.20 2.64 15 8 N -0.47 -12.66 7.83 -11.18 -0.09 -12.75 15 9 C 0.25 6.63 6.55 -85.02 -0.56 6.08 15 10 C -0.42 -11.09 9.14 -37.70 -0.34 -11.44 15 11 H 0.09 2.18 7.85 -52.48 -0.41 1.77 15 12 C 0.07 1.65 5.50 -17.34 -0.10 1.56 15 13 N -0.71 -18.39 11.46 55.55 0.64 -17.76 15 14 Si 0.91 18.13 29.56 -169.99 -5.02 13.10 15 15 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 18 C -0.20 -5.03 9.40 -38.26 -0.36 -5.39 15 19 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 20 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.06 0.75 8.14 -51.92 -0.42 0.32 15 22 H 0.11 2.15 7.70 -52.48 -0.40 1.74 15 23 H 0.13 2.57 8.06 -52.49 -0.42 2.14 15 24 H 0.27 6.38 8.29 -40.82 -0.34 6.04 15 25 H 0.12 2.82 7.73 -52.49 -0.41 2.41 15 LS Contribution 236.22 15.07 3.56 3.56 Total: -1.00 -29.58 236.22 -4.88 -34.46 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -2.05 Total: 0.73 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.20 Total: -2.45 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.55 Total: -30.50 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.71 Total: -18.90 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.58 -4.88 -34.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369662.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.804 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds