Wall clock time and date at job start Mon Mar 30 2020 02:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34672 * 117.00272 * 2 1 4 4 O 1.21432 * 119.99758 * 359.97438 * 3 2 1 5 5 C 1.48024 * 120.00206 * 180.02562 * 3 2 1 6 6 C 1.40192 * 120.84557 * 359.97438 * 5 3 2 7 7 C 1.38641 * 119.39963 * 180.02562 * 6 5 3 8 8 N 1.31391 * 121.15941 * 359.97438 * 7 6 5 9 9 C 1.33564 * 121.84506 * 359.73034 * 8 7 6 10 10 C 1.41380 * 119.76322 * 180.29084 * 9 8 7 11 11 H 1.08004 * 119.99738 * 180.24109 * 10 9 8 12 12 C 1.40063 * 120.00641 * 0.24269 * 10 9 8 13 13 N 1.30726 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00561 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46613 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47033 * 119.99935 * 14 12 10 17 17 H 1.48497 * 109.47023 * 239.99947 * 14 12 10 18 18 C 1.39388 * 120.84528 * 179.97438 * 5 3 2 19 19 H 1.08997 * 109.47190 * 60.00170 * 1 2 3 20 20 H 1.08994 * 109.47592 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47206 * 300.00162 * 1 2 3 22 22 H 1.08006 * 120.29788 * 359.97438 * 6 5 3 23 23 H 1.07998 * 119.41990 * 179.97438 * 7 6 5 24 24 H 0.96994 * 120.00271 * 180.02562 * 13 12 10 25 25 H 1.08002 * 120.58764 * 359.94917 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4021 2.2183 -0.0005 5 6 3.5416 1.2774 -0.0006 6 6 4.3224 0.1130 -0.0006 7 6 5.7047 0.2205 -0.0006 8 7 6.2953 1.3941 -0.0011 9 6 5.5986 2.5337 -0.0069 10 6 6.2797 3.7726 -0.0135 11 1 5.7201 4.6964 -0.0143 12 6 7.6800 3.8022 -0.0189 13 7 8.3573 2.6841 -0.0184 14 14 8.5798 5.4392 -0.0268 15 1 7.5912 6.5473 -0.0266 16 1 9.4363 5.5390 1.1822 17 1 9.4270 5.5324 -1.2427 18 6 4.1927 2.5098 -0.0011 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 3.8514 -0.8589 0.0002 23 1 6.3065 -0.6763 -0.0002 24 1 9.3270 2.7044 -0.0218 25 1 3.6273 3.4300 -0.0020 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369662.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:01 Heat of formation + Delta-G solvation = -73.397452 kcal Electronic energy + Delta-G solvation = -12730.698822 eV Core-core repulsion = 10287.585823 eV Total energy + Delta-G solvation = -2443.112999 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.51709 -39.87348 -37.49017 -35.60894 -33.02179 -32.03539 -28.73445 -27.72636 -25.18707 -23.35159 -22.10359 -19.75491 -18.54957 -17.79436 -17.36778 -16.88986 -16.16033 -16.00577 -15.41795 -14.55611 -14.43758 -14.27284 -13.99160 -13.13990 -12.97207 -12.87862 -12.77617 -12.26004 -11.82823 -11.81043 -11.71299 -11.29853 -10.40994 -9.71134 -9.66454 -8.38323 -6.60208 0.02864 0.77578 1.42447 1.49469 1.57896 1.71475 1.80934 2.22526 2.79190 3.79349 3.83677 4.14176 4.30838 4.32408 4.56666 4.63713 4.68184 4.77378 5.08671 5.15780 5.25737 5.45631 5.53865 5.90989 6.18004 6.57225 6.69944 6.82648 8.02512 8.37854 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.063718 B = 0.007963 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.331683 B = 3515.418011 C = 3939.596275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.519 3.481 4 O -0.539 6.539 5 C -0.074 4.074 6 C -0.258 4.258 7 C 0.110 3.890 8 N -0.501 5.501 9 C 0.219 3.781 10 C -0.458 4.458 11 H 0.091 0.909 12 C 0.025 3.975 13 N -0.748 5.748 14 Si 0.991 3.009 15 H -0.256 1.256 16 H -0.264 1.264 17 H -0.264 1.264 18 C -0.226 4.226 19 H 0.062 0.938 20 H 0.141 0.859 21 H 0.062 0.938 22 H 0.143 0.857 23 H 0.158 0.842 24 H 0.284 0.716 25 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 -3.686 -0.001 7.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.366 3.634 4 O -0.430 6.430 5 C -0.081 4.081 6 C -0.281 4.281 7 C -0.055 4.055 8 N -0.215 5.215 9 C 0.095 3.905 10 C -0.489 4.489 11 H 0.109 0.891 12 C -0.198 4.198 13 N -0.369 5.369 14 Si 0.810 3.190 15 H -0.180 1.180 16 H -0.188 1.188 17 H -0.188 1.188 18 C -0.250 4.250 19 H 0.081 0.919 20 H 0.159 0.841 21 H 0.081 0.919 22 H 0.161 0.839 23 H 0.175 0.825 24 H 0.095 0.905 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.125 -3.442 0.001 6.174 hybrid contribution -0.829 0.610 -0.003 1.029 sum -5.955 -2.831 -0.002 6.593 Atomic orbital electron populations 1.23644 0.74281 1.06119 1.02608 1.86562 1.25318 1.31232 1.83705 1.21472 0.89138 0.81440 0.71345 1.90727 1.67366 1.37192 1.47727 1.19208 0.88480 0.95507 1.04911 1.21874 0.94831 0.97359 1.14021 1.23141 0.92052 0.96633 0.93642 1.68618 1.38866 0.97439 1.16546 1.18934 0.88129 0.93207 0.90279 1.20065 0.92737 0.92493 1.43639 0.89137 1.26997 0.98306 1.02027 0.92470 1.70177 1.08659 1.29774 1.28303 0.85028 0.78164 0.76739 0.79026 1.17961 1.18814 1.18824 1.21993 0.95493 0.96147 1.11336 0.91895 0.84144 0.91900 0.83923 0.82464 0.90539 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 15 2 O -0.35 -11.71 9.91 -55.81 -0.55 -12.26 15 3 C 0.52 21.54 7.92 70.42 0.56 22.10 15 4 O -0.54 -24.18 16.22 20.06 0.33 -23.85 15 5 C -0.07 -3.42 5.90 -19.93 -0.12 -3.53 15 6 C -0.26 -11.02 9.72 22.84 0.22 -10.80 15 7 C 0.11 5.05 11.17 84.85 0.95 6.00 15 8 N -0.50 -27.32 7.83 -189.30 -1.48 -28.80 15 9 C 0.22 12.18 6.55 40.23 0.26 12.44 15 10 C -0.46 -24.81 9.14 23.49 0.21 -24.60 15 11 H 0.09 4.63 7.85 -2.91 -0.02 4.61 15 12 C 0.02 1.23 5.50 85.30 0.47 1.70 15 13 N -0.75 -39.14 11.46 21.84 0.25 -38.89 15 14 Si 0.99 37.29 29.56 68.60 2.03 39.31 15 15 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 16 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15 17 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 18 C -0.23 -11.69 9.40 23.13 0.22 -11.47 15 19 H 0.06 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.14 2.00 8.14 -2.39 -0.02 1.98 15 21 H 0.06 1.42 8.14 -2.38 -0.02 1.40 15 22 H 0.14 5.08 7.70 -2.91 -0.02 5.06 15 23 H 0.16 6.07 8.06 -2.91 -0.02 6.05 15 24 H 0.28 13.24 8.29 -92.71 -0.77 12.47 15 25 H 0.11 5.59 7.73 -2.91 -0.02 5.57 15 Total: -1.00 -64.33 236.22 5.74 -58.59 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.20 Total: 12.27 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 3.97 Total: -6.37 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -1.23 Total: -67.69 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.23 Total: -36.11 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.31 kcal Total: -64.33 5.74 -58.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369662.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.810 kcal (2) G-P(sol) polarization free energy of solvation -64.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds