Wall clock time and date at job start Mon Mar 30 2020 02:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34754 * 117.00235 * 2 1 4 4 O 1.21472 * 119.99875 * 359.97438 * 3 2 1 5 5 C 1.47767 * 119.99952 * 180.26936 * 3 2 1 6 6 C 1.39811 * 119.44825 * 179.72348 * 5 3 2 7 7 C 1.36831 * 119.45357 * 180.02562 * 6 5 3 8 8 C 1.41199 * 118.38754 * 0.02562 * 7 6 5 9 9 C 1.41032 * 120.55747 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99568 * 203.66488 * 9 8 7 11 11 C 1.40295 * 120.00083 * 23.65889 * 9 8 7 12 12 N 1.30608 * 119.99862 * 17.54951 * 11 9 8 13 13 Si 1.86803 * 119.99837 * 197.54235 * 11 9 8 14 14 H 1.48502 * 109.46878 * 90.00564 * 13 11 9 15 15 H 1.48500 * 109.46833 * 210.00229 * 13 11 9 16 16 H 1.48500 * 109.47008 * 330.00598 * 13 11 9 17 17 C 1.41128 * 118.88143 * 359.97438 * 8 7 6 18 18 N 1.31082 * 120.42045 * 359.72753 * 17 8 7 19 19 H 1.08997 * 109.46158 * 60.00231 * 1 2 3 20 20 H 1.08992 * 109.47179 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47071 * 300.00609 * 1 2 3 22 22 H 1.08000 * 120.27865 * 359.97438 * 6 5 3 23 23 H 1.07997 * 120.81052 * 180.02562 * 7 6 5 24 24 H 0.97002 * 120.00050 * 179.97438 * 12 11 9 25 25 H 1.07999 * 119.79001 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4023 2.2194 -0.0005 5 6 3.5395 1.2779 -0.0060 6 6 4.1622 2.5297 -0.0118 7 6 5.5286 2.6013 -0.0179 8 6 6.2641 1.3960 -0.0187 9 6 7.6742 1.4165 -0.0254 10 1 8.2248 0.5669 -0.4015 11 6 8.3618 2.5405 0.4563 12 7 7.7453 3.4084 1.2130 13 14 10.1591 2.7958 0.0157 14 1 10.2538 3.5846 -1.2390 15 1 10.8386 3.5290 1.1138 16 1 10.8133 1.4769 -0.1782 17 6 5.5643 0.1705 -0.0126 18 7 4.2536 0.1547 -0.0010 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 3.5697 3.4326 -0.0123 23 1 6.0324 3.5566 -0.0221 24 1 8.2207 4.1854 1.5464 25 1 6.1121 -0.7602 -0.0135 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369727.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:52 Heat of formation + Delta-G solvation = -86.314504 kcal Electronic energy + Delta-G solvation = -12704.025452 eV Core-core repulsion = 10260.352327 eV Total energy + Delta-G solvation = -2443.673124 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30297 -39.92764 -37.27190 -36.22290 -32.73819 -32.29024 -29.17970 -27.59687 -24.62174 -23.63281 -22.02905 -19.50109 -18.87667 -17.98759 -17.27462 -17.20333 -16.37514 -15.66192 -15.30743 -14.64389 -14.44970 -13.89479 -13.72273 -13.67122 -13.25270 -12.91644 -12.83840 -12.32455 -11.83777 -11.69319 -11.57295 -11.33217 -10.40983 -10.15336 -9.80303 -8.94096 -6.67768 0.09353 0.99409 1.34891 1.42069 1.57610 1.78596 1.98945 2.12536 2.62942 3.57209 3.79101 4.26664 4.35698 4.36349 4.62247 4.63997 4.71017 4.80741 4.96787 5.19611 5.33271 5.62223 5.73800 5.78752 6.29766 6.46097 6.55071 6.87018 7.52308 7.97229 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.086302 B = 0.007340 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.365529 B = 3814.004939 C = 4065.807873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.533 3.467 4 O -0.562 6.562 5 C -0.121 4.121 6 C -0.078 4.078 7 C -0.179 4.179 8 C 0.054 3.946 9 C -0.421 4.421 10 H 0.111 0.889 11 C 0.031 3.969 12 N -0.782 5.782 13 Si 1.000 3.000 14 H -0.259 1.259 15 H -0.266 1.266 16 H -0.247 1.247 17 C -0.022 4.022 18 N -0.423 5.423 19 H 0.060 0.940 20 H 0.133 0.867 21 H 0.059 0.941 22 H 0.116 0.884 23 H 0.127 0.873 24 H 0.305 0.695 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -1.905 -1.466 2.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.383 3.617 4 O -0.455 6.455 5 C -0.251 4.251 6 C -0.099 4.099 7 C -0.203 4.203 8 C 0.048 3.952 9 C -0.447 4.447 10 H 0.129 0.871 11 C -0.191 4.191 12 N -0.403 5.403 13 Si 0.818 3.182 14 H -0.184 1.184 15 H -0.190 1.190 16 H -0.169 1.169 17 C -0.193 4.193 18 N -0.133 5.133 19 H 0.079 0.921 20 H 0.151 0.849 21 H 0.078 0.922 22 H 0.134 0.866 23 H 0.145 0.855 24 H 0.116 0.884 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.354 -2.153 -1.291 2.535 hybrid contribution 0.607 1.243 0.059 1.384 sum 0.253 -0.911 -1.232 1.552 Atomic orbital electron populations 1.23535 0.75342 1.05495 1.02262 1.86680 1.24454 1.32057 1.84073 1.20962 0.88313 0.81031 0.71381 1.90674 1.66892 1.36888 1.51085 1.19102 0.89375 0.90508 1.26083 1.21262 0.95510 0.96422 0.96720 1.21338 0.92017 0.99374 1.07534 1.19080 0.95519 0.92526 0.88082 1.20403 0.91081 1.02499 1.30749 0.87081 1.27247 1.06893 0.93474 0.91460 1.69728 1.41741 1.09550 1.19322 0.84906 0.73737 0.80387 0.79152 1.18391 1.19003 1.16948 1.22951 0.88668 0.97660 1.10056 1.66960 1.09370 1.30461 1.06485 0.92089 0.84885 0.92215 0.86648 0.85483 0.88359 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.57 113.37 1.20 1.98 15 2 O -0.36 -14.83 10.37 -56.64 -0.59 -15.42 15 3 C 0.53 25.43 7.94 70.34 0.56 25.99 15 4 O -0.56 -27.48 16.08 19.92 0.32 -27.16 15 5 C -0.12 -6.18 6.75 41.85 0.28 -5.90 15 6 C -0.08 -3.96 9.55 22.32 0.21 -3.75 15 7 C -0.18 -9.10 8.75 22.67 0.20 -8.90 15 8 C 0.05 2.67 5.60 -21.16 -0.12 2.56 15 9 C -0.42 -19.16 9.08 23.46 0.21 -18.95 15 10 H 0.11 4.56 7.91 -2.91 -0.02 4.54 15 11 C 0.03 1.32 5.18 85.38 0.44 1.77 15 12 N -0.78 -35.21 10.91 21.88 0.24 -34.97 15 13 Si 1.00 31.09 29.60 68.60 2.03 33.12 15 14 H -0.26 -7.97 7.11 99.48 0.71 -7.26 15 15 H -0.27 -7.94 7.11 99.48 0.71 -7.23 15 16 H -0.25 -7.29 7.11 99.48 0.71 -6.58 15 17 C -0.02 -1.06 10.98 85.51 0.94 -0.12 15 18 N -0.42 -21.49 10.09 -182.87 -1.85 -23.33 15 19 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 20 H 0.13 2.73 8.14 -2.39 -0.02 2.71 15 21 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 22 H 0.12 5.56 7.61 -2.91 -0.02 5.54 15 23 H 0.13 6.42 6.18 -2.91 -0.02 6.41 15 24 H 0.30 12.08 8.29 -92.71 -0.77 11.31 15 25 H 0.16 6.67 8.06 -2.91 -0.02 6.65 15 Total: -1.00 -58.98 235.22 5.29 -53.69 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.21 Total: 19.40 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 3.93 Total: -5.33 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -1.61 Total: -58.30 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.27 Total: -42.57 kcal Atomic # 14 Polarization: 31.09 SS G_CDS: 2.03 Total: 33.12 kcal Total: -58.98 5.29 -53.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369727.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.626 kcal (2) G-P(sol) polarization free energy of solvation -58.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds