Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86801 * 119.99783 * 2 1 4 4 H 1.48502 * 109.46862 * 239.99878 * 3 2 1 5 5 H 1.48494 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47179 * 120.00362 * 3 2 1 7 7 C 1.38664 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99922 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.35641 * 116.99846 * 185.05537 * 9 7 2 11 11 C 1.39074 * 119.92261 * 354.44554 * 10 9 7 12 12 C 1.37715 * 120.08397 * 180.02562 * 11 10 9 13 13 C 1.39755 * 119.91679 * 359.97438 * 12 11 10 14 14 C 1.47502 * 120.08078 * 180.02562 * 13 12 11 15 15 N 1.29411 * 119.99818 * 179.97438 * 14 13 12 16 16 O 1.41601 * 119.99705 * 179.97438 * 15 14 13 17 17 C 1.39751 * 119.84009 * 359.97438 * 13 12 11 18 18 C 1.37717 * 119.91858 * 0.04054 * 17 13 12 19 19 H 0.97001 * 120.00142 * 0.02562 * 1 2 3 20 20 H 1.07997 * 119.95673 * 0.02562 * 11 10 9 21 21 H 1.08002 * 120.04598 * 179.72275 * 12 11 10 22 22 H 1.07995 * 119.99550 * 0.02562 * 14 13 12 23 23 H 0.96695 * 114.00097 * 180.02562 * 16 15 14 24 24 H 1.07997 * 120.03779 * 180.02562 * 17 13 12 25 25 H 1.08002 * 119.96055 * 179.97438 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0087 -1.2009 0.0005 8 1 3.0887 -1.2009 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0694 -3.5035 0.1076 11 6 3.4583 -3.4348 0.0943 12 6 4.2075 -4.5853 0.2023 13 6 3.5703 -5.8230 0.3257 14 6 4.3691 -7.0575 0.4421 15 7 3.7774 -8.2026 0.5569 16 8 4.5444 -9.3878 0.6681 17 6 2.1744 -5.8881 0.3397 18 6 1.4317 -4.7334 0.2311 19 1 -0.4850 0.8400 -0.0004 20 1 3.9500 -2.4780 -0.0007 21 1 5.2861 -4.5317 0.1874 22 1 5.4478 -7.0055 0.4324 23 1 4.0148 -10.1928 0.7490 24 1 1.6786 -6.8428 0.4354 25 1 0.3529 -4.7830 0.2414 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058181368.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = 3.869510 kcal Electronic energy + Delta-G solvation = -12333.173910 eV Core-core repulsion = 9893.411458 eV Total energy + Delta-G solvation = -2439.762452 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.15043 -37.15133 -36.11302 -32.97017 -32.23675 -30.37108 -28.43781 -25.61744 -22.74228 -22.01022 -19.88135 -18.19150 -17.40089 -16.98863 -15.28659 -14.88252 -14.62082 -14.15361 -13.82867 -13.59180 -13.38322 -12.85326 -12.47262 -11.81074 -11.63468 -11.21027 -11.07486 -10.81917 -10.54745 -9.79083 -9.70036 -9.45486 -8.89577 -8.33625 -7.21910 -6.60828 -4.17551 1.47132 2.16323 2.92810 3.05939 3.09966 3.11906 3.33998 3.85124 4.52535 4.96334 5.08327 5.14174 5.51184 5.70773 5.89682 6.10283 6.22098 6.55375 6.71073 6.80168 6.99109 7.11647 7.22824 7.29925 7.65598 7.84031 7.98844 8.83799 9.50851 10.55935 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.086664 B = 0.006229 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.010266 B = 4494.117736 C = 4803.219104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.096 0.904 9 O -0.165 6.165 10 C 0.169 3.831 11 C -0.241 4.241 12 C -0.032 4.032 13 C -0.177 4.177 14 C 0.178 3.822 15 N -0.366 5.366 16 O -0.432 6.432 17 C -0.028 4.028 18 C -0.201 4.201 19 H 0.274 0.726 20 H 0.133 0.867 21 H 0.115 0.885 22 H 0.109 0.891 23 H 0.398 0.602 24 H 0.122 0.878 25 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 -6.797 0.535 9.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.114 0.886 9 O -0.065 6.065 10 C 0.113 3.887 11 C -0.261 4.261 12 C -0.052 4.052 13 C -0.180 4.180 14 C -0.029 4.029 15 N -0.112 5.112 16 O -0.336 6.336 17 C -0.048 4.048 18 C -0.221 4.221 19 H 0.084 0.916 20 H 0.151 0.849 21 H 0.133 0.867 22 H 0.127 0.873 23 H 0.244 0.756 24 H 0.140 0.860 25 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.523 -6.678 0.524 8.682 hybrid contribution 1.019 0.481 0.021 1.127 sum 6.542 -6.197 0.546 9.028 Atomic orbital electron populations 1.70022 1.06108 1.28273 1.44320 1.25373 0.95890 0.99098 0.96074 0.85725 0.78746 0.79319 0.79377 1.19299 1.20142 1.19282 1.21399 0.92043 0.80618 1.52962 0.88619 1.83939 1.34838 1.11728 1.76023 1.19585 0.90347 0.87920 0.90895 1.21054 0.93632 0.98940 1.12446 1.20797 0.98573 0.90943 0.94885 1.17823 0.92684 0.89770 1.17754 1.24246 0.97914 0.90339 0.90422 1.76574 1.22540 0.93153 1.18885 1.88361 1.34740 1.15138 1.95363 1.20838 0.92473 0.97195 0.94301 1.20184 0.99883 0.90071 1.11937 0.91613 0.84948 0.86705 0.87350 0.75551 0.85972 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.06 13.67 55.48 0.76 -23.30 15 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 15 3 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 15 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 7 C -0.39 -10.48 9.48 30.89 0.29 -10.19 15 8 H 0.10 2.31 5.19 -52.49 -0.27 2.04 15 9 O -0.16 -4.49 9.75 0.45 0.00 -4.48 15 10 C 0.17 3.91 6.65 -38.96 -0.26 3.65 15 11 C -0.24 -4.92 9.15 -39.46 -0.36 -5.28 15 12 C -0.03 -0.55 9.78 -39.21 -0.38 -0.93 15 13 C -0.18 -3.11 5.87 -104.99 -0.62 -3.73 15 14 C 0.18 2.85 10.90 -14.80 -0.16 2.69 15 15 N -0.37 -6.02 11.23 32.11 0.36 -5.66 15 16 O -0.43 -6.17 14.95 -11.47 -0.17 -6.34 15 17 C -0.03 -0.51 9.57 -39.21 -0.38 -0.89 15 18 C -0.20 -4.15 9.97 -39.46 -0.39 -4.54 15 19 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 20 H 0.13 2.64 5.62 -52.49 -0.29 2.35 15 21 H 0.11 1.60 8.06 -52.49 -0.42 1.17 15 22 H 0.11 1.51 8.06 -52.49 -0.42 1.08 15 23 H 0.40 3.66 9.28 45.56 0.42 4.09 15 24 H 0.12 2.06 7.55 -52.49 -0.40 1.66 15 25 H 0.12 2.40 8.06 -52.49 -0.42 1.97 15 LS Contribution 237.45 15.07 3.58 3.58 Total: -1.00 -30.17 237.45 -3.79 -33.96 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -0.94 Total: 5.98 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -2.35 Total: -18.23 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 1.12 Total: -28.95 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.17 Total: -10.82 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.17 -3.79 -33.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058181368.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.825 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds