Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86801 * 119.99783 * 2 1 4 4 H 1.48502 * 109.46862 * 239.99878 * 3 2 1 5 5 H 1.48494 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47179 * 120.00362 * 3 2 1 7 7 C 1.38664 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99922 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.35641 * 116.99846 * 185.05537 * 9 7 2 11 11 C 1.39074 * 119.92261 * 354.44554 * 10 9 7 12 12 C 1.37715 * 120.08397 * 180.02562 * 11 10 9 13 13 C 1.39755 * 119.91679 * 359.97438 * 12 11 10 14 14 C 1.47502 * 120.08078 * 180.02562 * 13 12 11 15 15 N 1.29411 * 119.99818 * 179.97438 * 14 13 12 16 16 O 1.41601 * 119.99705 * 179.97438 * 15 14 13 17 17 C 1.39751 * 119.84009 * 359.97438 * 13 12 11 18 18 C 1.37717 * 119.91858 * 0.04054 * 17 13 12 19 19 H 0.97001 * 120.00142 * 0.02562 * 1 2 3 20 20 H 1.07997 * 119.95673 * 0.02562 * 11 10 9 21 21 H 1.08002 * 120.04598 * 179.72275 * 12 11 10 22 22 H 1.07995 * 119.99550 * 0.02562 * 14 13 12 23 23 H 0.96695 * 114.00097 * 180.02562 * 16 15 14 24 24 H 1.07997 * 120.03779 * 180.02562 * 17 13 12 25 25 H 1.08002 * 119.96055 * 179.97438 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0087 -1.2009 0.0005 8 1 3.0887 -1.2009 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0694 -3.5035 0.1076 11 6 3.4583 -3.4348 0.0943 12 6 4.2075 -4.5853 0.2023 13 6 3.5703 -5.8230 0.3257 14 6 4.3691 -7.0575 0.4421 15 7 3.7774 -8.2026 0.5569 16 8 4.5444 -9.3878 0.6681 17 6 2.1744 -5.8881 0.3397 18 6 1.4317 -4.7334 0.2311 19 1 -0.4850 0.8400 -0.0004 20 1 3.9500 -2.4780 -0.0007 21 1 5.2861 -4.5317 0.1874 22 1 5.4478 -7.0055 0.4324 23 1 4.0148 -10.1928 0.7490 24 1 1.6786 -6.8428 0.4354 25 1 0.3529 -4.7830 0.2414 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058181368.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = -17.740269 kcal Electronic energy + Delta-G solvation = -12334.110981 eV Core-core repulsion = 9893.411458 eV Total energy + Delta-G solvation = -2440.699522 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81921 -38.68496 -37.45601 -34.54821 -33.86076 -31.93259 -29.97681 -27.47464 -24.26489 -23.56921 -21.36481 -19.89871 -18.90369 -18.49093 -16.74144 -16.36631 -16.24572 -15.67008 -15.60216 -15.13414 -14.65717 -14.46635 -14.05142 -13.55209 -13.16446 -12.73907 -12.62112 -12.43977 -12.14082 -11.25457 -11.18881 -10.88356 -10.65979 -9.86799 -8.85043 -8.49325 -6.16680 0.03461 0.59772 1.38545 1.43208 1.54624 1.61371 2.17656 2.18584 2.86291 3.18193 3.44387 3.83410 4.12623 4.16831 4.48178 4.66474 4.68868 4.97584 5.09058 5.24624 5.50895 5.54163 5.64150 5.94739 6.00117 6.08971 6.89827 6.94916 7.71820 8.72847 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.086664 B = 0.006229 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.010266 B = 4494.117736 C = 4803.219104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.417 4.417 8 H 0.111 0.889 9 O -0.221 6.221 10 C 0.135 3.865 11 C -0.246 4.246 12 C -0.021 4.021 13 C -0.156 4.156 14 C 0.172 3.828 15 N -0.375 5.375 16 O -0.426 6.426 17 C -0.028 4.028 18 C -0.211 4.211 19 H 0.274 0.726 20 H 0.134 0.866 21 H 0.162 0.838 22 H 0.141 0.859 23 H 0.419 0.581 24 H 0.140 0.860 25 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 -8.491 0.739 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.493 4.493 8 H 0.128 0.872 9 O -0.126 6.126 10 C 0.082 3.918 11 C -0.265 4.265 12 C -0.041 4.041 13 C -0.158 4.158 14 C -0.036 4.036 15 N -0.118 5.118 16 O -0.337 6.337 17 C -0.048 4.048 18 C -0.231 4.231 19 H 0.083 0.917 20 H 0.151 0.849 21 H 0.179 0.821 22 H 0.158 0.842 23 H 0.270 0.730 24 H 0.158 0.842 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.467 -8.443 0.732 11.979 hybrid contribution 0.267 0.443 -0.002 0.517 sum 8.734 -8.000 0.730 11.866 Atomic orbital electron populations 1.70173 1.08179 1.29139 1.47903 1.26649 0.96808 1.02918 0.95488 0.84624 0.77387 0.73986 0.80122 1.17914 1.19938 1.17947 1.21920 0.92920 0.81090 1.53348 0.87194 1.83921 1.36344 1.12788 1.79556 1.20116 0.91855 0.87699 0.92113 1.21223 0.92666 1.00376 1.12238 1.21191 1.00697 0.89436 0.92769 1.18149 0.92422 0.91034 1.14238 1.24208 0.99123 0.89349 0.90875 1.76420 1.23992 0.94169 1.17233 1.88344 1.35107 1.15254 1.95004 1.21064 0.93224 0.96923 0.93603 1.20355 1.00196 0.90299 1.12223 0.91667 0.84870 0.82093 0.84232 0.73021 0.84246 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 13.67 21.61 0.30 -54.37 15 2 C -0.02 -1.10 5.49 84.84 0.47 -0.63 15 3 Si 1.02 40.82 29.55 68.60 2.03 42.84 15 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 7 C -0.42 -23.12 9.48 67.92 0.64 -22.47 15 8 H 0.11 5.44 5.19 -2.91 -0.02 5.42 15 9 O -0.22 -12.79 9.75 -21.32 -0.21 -13.00 15 10 C 0.14 6.41 6.65 22.67 0.15 6.56 15 11 C -0.25 -9.81 9.15 22.35 0.20 -9.60 15 12 C -0.02 -0.65 9.78 22.51 0.22 -0.43 15 13 C -0.16 -4.93 5.87 -20.10 -0.12 -5.05 15 14 C 0.17 4.70 10.90 87.49 0.95 5.65 15 15 N -0.38 -10.70 11.23 -52.32 -0.59 -11.29 15 16 O -0.43 -10.21 14.95 -38.79 -0.58 -10.79 15 17 C -0.03 -0.99 9.57 22.51 0.22 -0.77 15 18 C -0.21 -8.84 9.97 22.35 0.22 -8.62 15 19 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 20 H 0.13 5.23 5.62 -2.91 -0.02 5.22 15 21 H 0.16 3.57 8.06 -2.91 -0.02 3.54 15 22 H 0.14 3.02 8.06 -2.91 -0.02 2.99 15 23 H 0.42 5.88 9.28 -74.06 -0.69 5.20 15 24 H 0.14 4.37 7.55 -2.91 -0.02 4.35 15 25 H 0.12 4.87 8.06 -2.91 -0.02 4.84 15 Total: -1.00 -68.26 237.45 4.45 -63.81 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.54 Total: 18.16 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 2.96 Total: -35.37 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.29 Total: -65.66 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.79 Total: -23.79 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -68.26 4.45 -63.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058181368.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.070 kcal (2) G-P(sol) polarization free energy of solvation -68.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds